Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L12
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28)                 33   0.23 
SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055)                 30   2.9  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  

>SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28)
          Length = 588

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 558 PREASCREGGRRAADTSCWEAGDPSVPNCCRNSVH*VRNGVRPV 427
           PR+   R  GR   DTSC +  +P  PN   N+    R G  P+
Sbjct: 203 PRDFYWRHSGRSRIDTSCIQVNEPEDPNSWGNNFLCKRKGKMPI 246


>SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055)
          Length = 300

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 84  RHVDIVFSEKR*IAHIMEDGYMEQQDVSLNEVSRSDAPEAE 206
           RH+ +  S  +    I  DG +  QD+ L   S++D P AE
Sbjct: 257 RHIKLPISSPKNTRFIKHDGRVRGQDLRLRAESQTDRPRAE 297


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/74 (28%), Positives = 28/74 (37%)
 Frame = +1

Query: 352 RRLCDFVDAATDPQDLQCADEASSEDGADPVSDLMDRISTTIGDRWVPRLPT*CVRRPSA 531
           R+ CDF   +    D +C   ASS +    V +   +   T GD   P  P      P+ 
Sbjct: 51  RKSCDFCGGSCRDNDKRCPSWASSCNSNQYVKNNCKKTCGTCGDPPPPATPPPPTMPPTP 110

Query: 532 PLPA*CLPGGRWVP 573
           P P    P G   P
Sbjct: 111 PPPQTPAPPGPDTP 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,452,261
Number of Sequences: 59808
Number of extensions: 380120
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)