Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L12
         (886 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128140-1|BAC87294.1|  280|Homo sapiens protein ( Homo sapiens ...    31   4.2  
AK125824-1|BAC86307.1|  280|Homo sapiens protein ( Homo sapiens ...    31   4.2  

>AK128140-1|BAC87294.1|  280|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46261 fis, clone TESTI4025062. ).
          Length = 280

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 588 SSY*EGDPSAPREASCREGGRRAADTSCWEAGDPSVPNCCRNS 460
           S +  G  S P   SCR  G  +   SCW +G  S    C++S
Sbjct: 77  SCWSSGTSSTP--CSCRSSGTSSTSCSCWSSGTSSTSWSCKSS 117



 Score = 30.7 bits (66), Expect = 7.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 546 SCREGGRRAADTSCWEAGDPSVPNCCRNS 460
           SC   G      SCW +G  S P  CR+S
Sbjct: 65  SCWSSGTSFTSCSCWSSGTSSTPCSCRSS 93


>AK125824-1|BAC86307.1|  280|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43836 fis, clone TESTI4005857. ).
          Length = 280

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 588 SSY*EGDPSAPREASCREGGRRAADTSCWEAGDPSVPNCCRNS 460
           S +  G  S P   SCR  G  +   SCW +G  S    C++S
Sbjct: 77  SCWSSGTSSTP--CSCRSSGTSSTSCSCWSSGTSSTSWSCKSS 117



 Score = 30.7 bits (66), Expect = 7.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 546 SCREGGRRAADTSCWEAGDPSVPNCCRNS 460
           SC   G      SCW +G  S P  CR+S
Sbjct: 65  SCWSSGTSFTSCSCWSSGTSSTPCSCRSS 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,916,193
Number of Sequences: 237096
Number of extensions: 2019045
Number of successful extensions: 3578
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)