Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L11
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 213 1e-55
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 50 3e-06
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 48 1e-05
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 46 5e-05
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 36 0.033
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 32 0.53
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 2.8
08_02_0279 - 15249361-15249612,15251270-15251506,15252704-152527... 29 4.9
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.9
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.9
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 213 bits (521), Expect = 1e-55
Identities = 114/215 (53%), Positives = 140/215 (65%), Gaps = 8/215 (3%)
Frame = +2
Query: 74 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 244
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 245 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 409
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 410 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 589
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 590 NTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 694
NTAVVI + GN+IG HRKNHIPRVGDFNES YYME
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYME 240
Score = 80.6 bits (190), Expect = 2e-15
Identities = 37/63 (58%), Positives = 41/63 (65%)
Frame = +3
Query: 693 KGNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGXNGAEIVLIRXRXSPEKGXQLXWNXE 872
+GNTGHPVF T YGKI VNIC+GRHH LNW+ FG NGAEIV E + W E
Sbjct: 240 EGNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPM-WPIE 298
Query: 873 XRN 881
RN
Sbjct: 299 ARN 301
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/111 (27%), Positives = 59/111 (53%)
Frame = +2
Query: 356 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 535
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 536 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYY 688
VI S E + ++ +N+ +I G +G +RK+HIP + E Y+
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYF 138
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 48.0 bits (109), Expect = 1e-05
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Frame = +2
Query: 320 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDG--- 490
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 491 -PTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHI 652
P+ + + E+A + +V + E+ + L+NT V G + GKHRK H+
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHL 162
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 45.6 bits (103), Expect = 5e-05
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +2
Query: 398 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILERDEK 571
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 572 HSDILWNTAVVISDTGNVIGKHRKNHI 652
S L+NT VI G + KHRK H+
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHL 95
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 36.3 bits (80), Expect = 0.033
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Frame = +2
Query: 338 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 484
A +K +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 485 D--GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 643
D GP T L LA KY + +V ++ER L+NT + G +GKHRK
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK 158
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 32.3 bits (70), Expect = 0.53
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 488 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 643
GP T L +A KY + +V ++ER+ L+ + + G +GKHRK
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK 162
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 413 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 592
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 593 TAVVISDTGNVIGK 634
+ TGNV +
Sbjct: 824 ETASFTATGNVFSQ 837
>08_02_0279 -
15249361-15249612,15251270-15251506,15252704-15252772,
15252845-15252895,15254009-15254056,15254187-15254267,
15256219-15256257,15256486-15256551,15258113-15258236,
15258576-15258696,15258771-15258900,15259692-15259853
Length = 459
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 619 KRDREASQEPHSESRRF*RIQLLHGKVTPXILYSRP 726
KR+RE + PH F R+ + P +L++RP
Sbjct: 358 KRERELKRRPHQNGWLFKRVPEMRDPEEPVMLFTRP 393
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 489 PSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 379
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -2
Query: 462 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 331
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,255,019
Number of Sequences: 37544
Number of extensions: 499728
Number of successful extensions: 1441
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -