Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L11
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             48   8e-06
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 44   2e-04
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          36   0.058
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)                    31   1.2  
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)          30   2.9  
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)                   29   5.0  
SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022)            29   6.6  
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  28   8.8  
SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)                      28   8.8  

>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 48.4 bits (110), Expect = 8e-06
 Identities = 26/92 (28%), Positives = 44/92 (47%)
 Frame = +2

Query: 56  MENETHSLESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXFP 235
           M  E  SL   +  NL   DL+E  RI +G   + ++ L  +++                
Sbjct: 1   MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59

Query: 236 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQ 331
           A  E+ R PR+V++G +Q+ I  PT+ P+ +Q
Sbjct: 60  AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91


>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
 Frame = +2

Query: 266 IVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTR 445
           + ++G++Q  +AV  ++  N Q+     K+K+ +      G  I+   E +N P+     
Sbjct: 5   VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52

Query: 446 EKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGN 622
             Q + ++AE    G ++  L E+A +    IV  SI ER       L+NT++    +GN
Sbjct: 53  -TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNRK--LYNTSLSYDPSGN 108

Query: 623 VIGKHRKNHI 652
           ++GKHRK H+
Sbjct: 109 LMGKHRKIHL 118


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
 Frame = +2

Query: 257 PPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAF 436
           P  + ++G++Q  +AV  ++  N Q+     K+K+ +      G  I+   E +N P+  
Sbjct: 4   PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54

Query: 437 CTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISD 613
                Q + ++AE    G ++  L E+A +    IV  SI ER       L+NT++    
Sbjct: 55  ----TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDP 107

Query: 614 TGNVIGKHRK 643
           +GN++GKHRK
Sbjct: 108 SGNLMGKHRK 117


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
 Frame = +2

Query: 467 FAESAED--GPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKH 637
           F + AE+  G ++  L E+A +    IV  SI ER       L+NT++    +GN++GKH
Sbjct: 12  FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKH 69

Query: 638 RKNHI 652
           RK H+
Sbjct: 70  RKIHL 74


>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
          Length = 949

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 236 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 373
           A D +  P   VK     H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808


>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
          Length = 1671

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 577 RMLLVPF*YRGHDHHCVLDGEFPKE 503
           R L+ PF +R +DH  V+D  FPK+
Sbjct: 74  RKLIKPFYFRQYDHGSVVDAIFPKD 98


>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 236 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 373
           AKD +  P   VK     H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869


>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
          Length = 250

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 236 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 373
           A D +  P   VK     H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223


>SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022)
          Length = 1002

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -1

Query: 430 EGHIPQLLETD--DVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRR 257
           +GH+  LLE +  D   L+    ++LLD      LL V++   GH  G+L   +L     
Sbjct: 312 KGHLVGLLEVEFLDKEHLVGLLEEELLDKGHLVGLLEVEFLDKGHLVGLLEVEFLDKGHL 371

Query: 256 SGLL---VLGRESVCGDVEVSLL 197
            GLL    L +  + G +EV  L
Sbjct: 372 VGLLEEEFLDKGQLVGLLEVEFL 394


>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 427 GHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDW 317
           G +P   +   +NTLL GN  D   F  NC  LL  W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 566 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 694
           +K  D LW  A  + D      KH++N I R  +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430


>SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)
          Length = 146

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 462 HHGCFSLVQNAKGIFHNSWKQMMLTPSW 379
           HH CF ++ +A  +      Q  ++PSW
Sbjct: 44  HHACFGIIPSALSVLVERGDQEAVSPSW 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,507,749
Number of Sequences: 59808
Number of extensions: 571411
Number of successful extensions: 1693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)