Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L09
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 176 2e-44
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 173 2e-43
05_05_0161 + 22833507-22834694 29 4.7
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.2
06_03_0543 + 21967787-21970261 29 6.2
02_05_0625 + 30453521-30453890,30454215-30454352,30454458-304547... 29 6.2
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.1
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.1
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 8.1
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 176 bits (428), Expect = 2e-44
Identities = 83/133 (62%), Positives = 101/133 (75%)
Frame = +2
Query: 59 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 238
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 239 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 418
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 419 REPRLLIVLDPGT 457
EPRLLI+ DP T
Sbjct: 121 SEPRLLILTDPRT 133
Score = 116 bits (278), Expect = 3e-26
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +3
Query: 459 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 638
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTI 193
Query: 639 PRDQRWDVVVDLFFYHDPEESEK 707
+WDV+VDLFFY DPEE+++
Sbjct: 194 LPGHKWDVMVDLFFYRDPEEAKE 216
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 173 bits (420), Expect = 2e-43
Identities = 80/122 (65%), Positives = 96/122 (78%)
Frame = +2
Query: 92 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 271
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 272 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 451
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 452 GT 457
T
Sbjct: 132 RT 133
Score = 116 bits (278), Expect = 3e-26
Identities = 49/83 (59%), Positives = 64/83 (77%)
Frame = +3
Query: 459 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 638
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTI 193
Query: 639 PRDQRWDVVVDLFFYHDPEESEK 707
+WDV+VDLFFY DPEE+++
Sbjct: 194 LPGHKWDVMVDLFFYRDPEEAKE 216
>05_05_0161 + 22833507-22834694
Length = 395
Score = 29.1 bits (62), Expect = 4.7
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Frame = +2
Query: 239 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFT-----PGAFTNQ 403
+ ++A A A SSRP GQR+V + + P+ G+ GA +
Sbjct: 95 RAIVAHGACACAHATAPNLPASSRPPGQRSVARVVCN----PLTGQLLRLPDIDGASSEV 150
Query: 404 IQAAFREPRLLIVLDPGTRPSTHY*SFICQHSCDCFVQHR 523
LL D G P Y + + SCD FV HR
Sbjct: 151 SPGLMGYAGLLTQADGGDGPPDRY--AVAEVSCDDFVMHR 188
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 159 TFSAPRWVVAASILVTSSSLRASTSNP 79
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 588 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 677
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>02_05_0625 +
30453521-30453890,30454215-30454352,30454458-30454727,
30454844-30454983,30455067-30455213,30455319-30456008
Length = 584
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 360 RLLRDVSHRVLLLTRSKLHSVNLVS*LYWTLAQDHQPITEASYV 491
++LR++ HRV +TR L S N++S +++ Q + I + SY+
Sbjct: 377 KVLRELGHRVKTMTR--LSSQNILSEVHFAAEQLQKKIDQKSYL 418
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -2
Query: 341 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 186
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 166 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 273
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 112 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 291
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 292 VRHLITALRSACCTEVCR 345
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,213,713
Number of Sequences: 37544
Number of extensions: 595416
Number of successful extensions: 1589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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