Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L09
(846 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 211 6e-55
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35) 36 0.041
SB_588| Best HMM Match : p450 (HMM E-Value=0.17) 35 0.095
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 30 2.7
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 29 4.7
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.7
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4) 29 6.3
SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 28 8.3
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 211 bits (515), Expect = 6e-55
Identities = 96/127 (75%), Positives = 112/127 (88%)
Frame = +2
Query: 71 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 250
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 251 AARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPR 430
AAR +V IENPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPR
Sbjct: 61 AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 431 LLIVLDP 451
LLIV DP
Sbjct: 121 LLIVCDP 127
Score = 142 bits (344), Expect = 3e-34
Identities = 61/84 (72%), Positives = 72/84 (85%)
Frame = +3
Query: 459 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 638
DHQP+TEASYVNIPVIA CNTDSPLR VD+AIPCN K HSIGLM+WLLAREVLR+RG +
Sbjct: 130 DHQPVTEASYVNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSI 189
Query: 639 PRDQRWDVVVDLFFYHDPEESEKD 710
R W+++ DL+FY DPEE+EK+
Sbjct: 190 SRALPWEIMPDLYFYRDPEEAEKE 213
>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1772
Score = 35.9 bits (79), Expect = 0.041
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 673 KSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGIAMST-NLSGE---SVLHKA 506
K+TT RWS+G TP ++ H I L+ HG ST NL+ E VL++
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPSTKNLTTEQAKQVLNEN 1453
Query: 505 ITGMLTY 485
G +TY
Sbjct: 1454 ELGTMTY 1460
>SB_588| Best HMM Match : p450 (HMM E-Value=0.17)
Length = 304
Score = 34.7 bits (76), Expect = 0.095
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 330 Y*SLPRTPVLRLLRDVSHRVLLLTRSKLHSVNLVS*LYWTLAQDHQPITEASYVNIPVIA 509
Y +P PV R S V + + +L +N + W ++Q++ P+ Y +IP +A
Sbjct: 36 YKEIPGPPVERFF---SGHVPIFNQGRLRGLNFYQ-ILWEISQEYSPVILLWYYHIPFVA 91
Query: 510 LC 515
LC
Sbjct: 92 LC 93
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 576 HSIGLMWWLLAREVLRLRGVLP 641
H G +WW+L E LR + VLP
Sbjct: 46 HDDGSVWWVLTSESLRAKAVLP 67
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 678 RTNQPQHPSAGHGEA-HHEASTLHVPTTTTSNQ*SGKTWCC 559
R QP H ++ + A HH A LH P +TS + W C
Sbjct: 176 RDGQPCHGASMNNFAYHHAADFLHYPPVSTSYMPAHPYWTC 216
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 328 CTEVCRAHRCYAY-CGTFHTGCFY*PDPSC 414
C +V R HR Y C H G F+ PD C
Sbjct: 1182 CGKVFREHRILRYHCNVKHRGIFFIPDSVC 1211
>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
Length = 158
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 270 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHRVLLLTRSKLHSVNL 428
PSRTPL ++ +G +S+ Y VLR+ R H ++ ++R L ++N+
Sbjct: 49 PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV 100
>SB_726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = -3
Query: 676 NKSTTTSQRWSRGSTPRSLNTSRANNHHIKPIEWEDL---VLHGIAMSTNLSGESVLHKA 506
N+ T ++ STP + N+ ++P EW ++ H + L+GES
Sbjct: 6 NRRPTFKYKFGDSSTPFYSALKKQNDRSMRPWEWHEMKARYSHAQTLINALTGESKYEFT 65
Query: 505 ITG 497
+TG
Sbjct: 66 LTG 68
>SB_51220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 634 TPRSLNTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLH 512
T +SLN S N + P EW + V+ G+ LSG ++L+
Sbjct: 864 TAQSLNVSVDNLKFLAPTEWRE-VIPGLKQEILLSGSNMLN 903
>SB_41665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 657
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 238 KTCSGCSCCRSHREPR*CVRHLITALRSACCTEVCRAHRCYAYCGTFHTGC 390
+TC C+ C C +L+ C + AHRC CG GC
Sbjct: 594 RTCGRCNVCYDAENDSVC-----DSLKHTCSDDEATAHRCSLTCGLL--GC 637
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 683 VEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 537
V Q+ + P +T HT+ T P HQ + +GR G DSNV +
Sbjct: 242 VTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,486,004
Number of Sequences: 59808
Number of extensions: 667595
Number of successful extensions: 1640
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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