Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L09
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   166   1e-41
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   164   6e-41
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   164   6e-41
At2g22340.1 68415.m02651 hypothetical protein                          33   0.32 
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa...    29   3.9  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    29   5.1  
At1g72710.1 68414.m08408 casein kinase, putative similar to case...    29   5.1  
At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) / cyclin-d...    28   6.8  
At2g42180.1 68415.m05220 expressed protein                             28   6.8  
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha...    28   6.8  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  166 bits (404), Expect = 1e-41
 Identities = 77/122 (63%), Positives = 93/122 (76%)
 Frame = +2

Query: 92  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 271
           L+  E DV  M AA  HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12  LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71

Query: 272 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 451
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131

Query: 452 GT 457
            T
Sbjct: 132 RT 133



 Score =  122 bits (295), Expect = 2e-28
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = +3

Query: 459 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 638
           DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193

Query: 639 PRDQRWDVVVDLFFYHDPEESEKD 710
              Q+WDV+VDLFFY +PEE++ +
Sbjct: 194 AAGQKWDVMVDLFFYREPEETKPE 217


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  164 bits (399), Expect = 6e-41
 Identities = 74/118 (62%), Positives = 92/118 (77%)
 Frame = +2

Query: 104 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 283
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 284 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPGT 457
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP T
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134



 Score =  118 bits (284), Expect = 5e-27
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = +3

Query: 459 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 638
           DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194

Query: 639 PRDQRWDVVVDLFFYHDPEESEKD 710
              Q+WDV+VDLFFY +PEE++++
Sbjct: 195 LAAQKWDVMVDLFFYREPEEAKQE 218


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  164 bits (399), Expect = 6e-41
 Identities = 74/118 (62%), Positives = 92/118 (77%)
 Frame = +2

Query: 104 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 283
           E D+  ML+A  HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17  EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76

Query: 284 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPGT 457
            D+ V S+RP+GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP T
Sbjct: 77  KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134



 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 42/71 (59%), Positives = 53/71 (74%)
 Frame = +3

Query: 459 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 638
           DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194

Query: 639 PRDQRWDVVVD 671
              Q+WDV+V+
Sbjct: 195 LAAQKWDVMVN 205


>At2g22340.1 68415.m02651 hypothetical protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 142 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 261
           SW     LP+GD  +Q  C WY   +  S +G+  +   C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227


>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 146

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 522 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVV--DLFFYHDP 692
           D  L   ++A+ C TKS   +    +  ++ V  +   +P  +RWD  +   +  +H P
Sbjct: 49  DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWDACLARPISSFHTP 107


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 570 SSHSIGLMWWLLAR-EVLRLRGVLPRDQRWDVVVDLFFYH 686
           S+ S G  WWLL+  E +    +LP+   W    D+ FY+
Sbjct: 555 STVSFGTTWWLLSSVENICNTDMLPKSSPWTCPGDVVFYN 594


>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
           kinase I, delta isoform [Arabidopsis thaliana]
           SWISS-PROT:P42158
          Length = 465

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 714 VHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 586
           + P +FL G GRR NQ      G  + + +++  H+P     N
Sbjct: 129 IKPDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171


>At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) /
           cyclin-dependent kinase inhibitor 5 (ICK5) identical to 
           cyclin-dependent kinase inhibitor 5 (krp5) [Arabidopsis
           thaliana] GI:14422293
          Length = 189

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 403 LVSKSTRCETSRNRRSTGVRGKLQYSTLTEGP**DDEHIS 284
           L+    +C+T   R S+G   KL+  T TE    D+E IS
Sbjct: 79  LIPSVNQCQTKNPRASSGPAKKLEPDTTTEEACGDNERIS 118


>At2g42180.1 68415.m05220 expressed protein
          Length = 166

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
 Frame = +3

Query: 294 SSSHHGPSVSVLY*SLPRTPVLRLLRDVSH-RVLLLTRSKLHSVNLVS*LYWTL---AQD 461
           SSS H  ++  L+ +L    + RLLR +S  R +L+  SK +   L   +++T       
Sbjct: 7   SSSSHSTNLKTLFINLITHSLYRLLRSLSRARSVLIEISKHNKKRLFMMMFYTTKSSMNQ 66

Query: 462 HQPITEASYVNIPV 503
           H     +S+V +PV
Sbjct: 67  HNIFFGSSHVVVPV 80


>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
           A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
           from [Arabidopsis thaliana]
          Length = 78

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 208 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 330
           P  Q   Y GK  +     + +   R  V HL+ ALR  CC
Sbjct: 38  PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,600,684
Number of Sequences: 28952
Number of extensions: 449200
Number of successful extensions: 1126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)