Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L08
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 91 1e-18
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 91 1e-18
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 91 1e-18
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 91 1e-18
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 91 1e-18
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 91 1e-18
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 91 1e-18
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 91 1e-18
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 91 1e-18
AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical... 74 1e-13
U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocyto... 73 3e-13
U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocyto... 73 3e-13
AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein. 73 3e-13
AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical... 54 1e-07
Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical p... 30 2.3
U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.1
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr... 29 5.4
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ... 29 5.4
AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical ... 28 7.1
AF099925-17|AAO38624.1| 462|Caenorhabditis elegans Calcium bind... 28 7.1
AF099925-16|AAC69511.1| 482|Caenorhabditis elegans Calcium bind... 28 7.1
AF099925-15|AAC69510.2| 585|Caenorhabditis elegans Calcium bind... 28 7.1
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 28 7.1
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 482 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 540
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 541 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 575
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-mediated
endocytosis 1isoform II protein.
Length = 835
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 728 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 786
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 787 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 821
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 469 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 527
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 528 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 562
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 448 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 506
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 507 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 541
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 469 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 527
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 528 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 562
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 679 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 737
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 738 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 772
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 506 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 564
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 565 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 599
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor mediated
endocytosis protein1, isoform b protein.
Length = 835
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 728 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 786
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 787 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 821
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/98 (46%), Positives = 62/98 (63%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W + + E F +LGPVNG L+G AK M++S+LP VLG++W LAD + DG+LD
Sbjct: 482 WVV-SRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVLGKVWKLADIDKDGQLD 540
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRG 434
EF++A +INLKL G E+P LP LI P+ RG
Sbjct: 541 ADEFALANYLINLKLEGHEIPSELPKHLI---PPSKRG 575
>AL117204-29|CAB55138.1| 1097|Caenorhabditis elegans Hypothetical
protein Y116A8C.36 protein.
Length = 1097
Score = 74.1 bits (174), Expect = 1e-13
Identities = 39/110 (35%), Positives = 60/110 (54%)
Frame = +3
Query: 129 MADPWTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNAD 308
M +PW + E+ K F L + A+ +++S LP VL QIW+L+D + D
Sbjct: 1 MTNPWEVSDAEYQKNFAMFGQLTGGQPFMDAVTARNALMRSNLPTQVLSQIWALSDLDKD 60
Query: 309 GKLDLKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRGPNLLRGSR 458
G+LD++E+SIA ++ L G+ +P LPPSL+ + P P GSR
Sbjct: 61 GRLDIREYSIAMRLALNCLAGIPIPPQLPPSLL--VVPARNAPPTWPGSR 108
Score = 65.7 bits (153), Expect = 4e-11
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Frame = +3
Query: 105 RNVFNSEMMADPWTIQAHEHAKFSEHFRNLGPVN-GNLTGEQAKRFMLQSQLPPPVLGQI 281
RNVF + + W I H K+S+ F L G+L+ + + + S LP VL I
Sbjct: 159 RNVFEGRQLEN-WAIPHHNKLKYSQLFNALDKERLGSLSSQVGRSALGLSGLPTNVLAHI 217
Query: 282 WSLADTNADGKLDLKEFSIACKIINLKLRGLEVPKMLPPSLIASLSPTGRGPN 440
W L+D N DGKL + E++I+ +I + G +PK+ P L+ + R N
Sbjct: 218 WFLSDVNKDGKLSVDEYAISQYMIEMFKSGFALPKITPLELVRMCGISSRSAN 270
>U29244-9|AAN60507.1| 681|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform b
protein.
Length = 681
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/89 (38%), Positives = 50/89 (56%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W I + AK+ F++L PVNG L+G + ++ S L L +IW L+D + DG LD
Sbjct: 111 WPITPTDQAKYDSIFQSLNPVNGKLSGAHVRPVLMNSGLDAHALARIWELSDQDKDGNLD 170
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLI 407
E S+A ++ L+ VP LPP+LI
Sbjct: 171 RIEMSVALHLVYRSLQSDPVPAQLPPNLI 199
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +3
Query: 132 ADPWTIQAHEHA-KFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNAD 308
A W I ++A +F++ N +G + G + M+ + L +L +W+LAD
Sbjct: 288 AGEWPINTGDYADQFAQTDTNK---DGLVDGMDMRAPMMTTGLSAQILAHVWALADIKKC 344
Query: 309 GKLDLKEFSIACKIINLKLRGLEVPKMLPPSLI 407
G+L+L++F++ ++++ RG +P LP LI
Sbjct: 345 GQLNLEQFALTMHLLDMAKRGESIPSELPLHLI 377
Score = 34.7 bits (76), Expect = 0.082
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 264 PVLGQIWSLADTNADGKLDLKEFSIACKIINLKLRGLEV 380
PVLGQIW L+D+ G LD + +A K++ +G V
Sbjct: 2 PVLGQIWELSDSQKVGSLDKRGAFVAFKLVAAAQQGKPV 40
>U29244-8|AAC71084.1| 751|Caenorhabditis elegans Eps15 (endocytosis
protein) homologoussequence protein 1, isoform a
protein.
Length = 751
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/89 (38%), Positives = 50/89 (56%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W I + AK+ F++L PVNG L+G + ++ S L L +IW L+D + DG LD
Sbjct: 111 WPITPTDQAKYDSIFQSLNPVNGKLSGAHVRPVLMNSGLDAHALARIWELSDQDKDGNLD 170
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLI 407
E S+A ++ L+ VP LPP+LI
Sbjct: 171 RIEMSVALHLVYRSLQSDPVPAQLPPNLI 199
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +3
Query: 132 ADPWTIQAHEHA-KFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNAD 308
A W I ++A +F++ N +G + G + M+ + L +L +W+LAD
Sbjct: 288 AGEWPINTGDYADQFAQTDTNK---DGLVDGMDMRAPMMTTGLSAQILAHVWALADIKKC 344
Query: 309 GKLDLKEFSIACKIINLKLRGLEVPKMLPPSLI 407
G+L+L++F++ ++++ RG +P LP LI
Sbjct: 345 GQLNLEQFALTMHLLDMAKRGESIPSELPLHLI 377
Score = 34.7 bits (76), Expect = 0.082
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 264 PVLGQIWSLADTNADGKLDLKEFSIACKIINLKLRGLEV 380
PVLGQIW L+D+ G LD + +A K++ +G V
Sbjct: 2 PVLGQIWELSDSQKVGSLDKRGAFVAFKLVAAAQQGKPV 40
>AY027560-1|AAK13051.1| 796|Caenorhabditis elegans EHS-1 protein.
Length = 796
Score = 72.5 bits (170), Expect = 3e-13
Identities = 34/89 (38%), Positives = 50/89 (56%)
Frame = +3
Query: 141 WTIQAHEHAKFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNADGKLD 320
W I + AK+ F++L PVNG L+G + ++ S L L +IW L+D + DG LD
Sbjct: 156 WPITPTDQAKYDSIFQSLNPVNGKLSGAHVRPVLMNSGLDAHALARIWELSDQDKDGNLD 215
Query: 321 LKEFSIACKIINLKLRGLEVPKMLPPSLI 407
E S+A ++ L+ VP LPP+LI
Sbjct: 216 RIEMSVALHLVYRSLQSDPVPAQLPPNLI 244
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = +3
Query: 132 ADPWTIQAHEHA-KFSEHFRNLGPVNGNLTGEQAKRFMLQSQLPPPVLGQIWSLADTNAD 308
A W I ++A +F++ N +G + G + M+ + L +L +W+LAD
Sbjct: 333 AGEWPINTGDYADQFAQTDTNK---DGLVDGMDMRAPMMTTGLSAQILAHVWALADIKKC 389
Query: 309 GKLDLKEFSIACKIINLKLRGLEVPKMLPPSLI 407
G+L+L++F++ ++++ RG +P LP LI
Sbjct: 390 GQLNLEQFALTMHLLDMAKRGESIPSELPLHLI 422
Score = 46.4 bits (105), Expect = 3e-05
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 129 MADPWTIQAHEHAKFSEHFRNLGPVNGNLTGE-QAKRFMLQSQLPPPVLGQIWSLADTNA 305
M D + I + F+ F + P G +A F+ +S L PVLGQIW L+D+
Sbjct: 1 MDDSYAIATPHNDVFNHAFAEMNPHGAPRIGAAEAATFLKKSNLAMPVLGQIWELSDSQK 60
Query: 306 DGKLDLKEFSIACKIINLKLRGLEV 380
G LD + +A K++ +G V
Sbjct: 61 VGSLDKRGAFVAFKLVAAAQQGKPV 85
>AL132948-37|CAD31830.2| 410|Caenorhabditis elegans Hypothetical
protein Y39B6A.38 protein.
Length = 410
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +3
Query: 237 FMLQSQLPPPVLGQIWSLADTNADGKLDLKEFSIACKIINLKLRG-LEVPKMLP 395
F +S L L +IWSLAD N DG LDL EFSIA ++ LK++G + +P +LP
Sbjct: 85 FFKRSSLDMSSLSKIWSLADVNEDGWLDLNEFSIAMHLVVLKVKGEVPIPDVLP 138
>Z81568-10|CAB04600.1| 441|Caenorhabditis elegans Hypothetical
protein K08E3.8 protein.
Length = 441
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 523 PRILGPTH*TTPLALLHPTCDPLRGQNPDEVRGLPRSTLQPDSAAHPKDAQPTELSR 693
P L PTH + P ++ P+ P+ Q+ GLP S ++ H + Q T LSR
Sbjct: 124 PMSLPPTHVSRPGSVAPPSSVPVNLQHTSGAPGLPGSQMEHQYPMHLQPQQQT-LSR 179
>U23522-1|AAC46819.3| 962|Caenorhabditis elegans Hypothetical
protein W06B4.3 protein.
Length = 962
Score = 29.5 bits (63), Expect = 3.1
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Frame = +3
Query: 24 LSGFTRSFFRRISLKSILLGQTTAKVQRNVFNSEMMADPWTIQ-AHEHAKFSEHFRNLGP 200
L GFT S SL++ L+ T + F+S P T+Q +KFSE F+N G
Sbjct: 162 LGGFTSS----ASLQAGLMNLATEQAPSTTFHS-FFTSPNTLQHTISSSKFSEKFKNHGF 216
Query: 201 VNGNLTGEQAKRFMLQSQLPPPV-LGQIWSLADTNADGKLDLKEFSIACKIINLKL 365
+ + T + KR+ S P + +G + A+ D + ++EF+I ++I +L
Sbjct: 217 LTMHPTIAEPKRYAWLS--PDGISIGNVNIYAERIQD--VLVEEFNIEHRLIEGRL 268
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Frame = +3
Query: 522 PKDFRAHPLNDSPGTLTPDVRSPPRSE-PR*GKGVTAVNTTTRQ---RGSPQGRPADGAF 689
P+ R P SP T +P SPP PR G G ++ ++ + RG P+G P G
Sbjct: 333 PRQKRQAP-ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPR 391
Query: 690 ETNRRL*NVXRLGTAVRQAAXT-VPXVSGIPXGPXPXCXXGTXXXXTG 830
+++ R++ T P P G P T TG
Sbjct: 392 KSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTG 439
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Frame = +3
Query: 522 PKDFRAHPLNDSPGTLTPDVRSPPRSE-PR*GKGVTAVNTTTRQ---RGSPQGRPADGAF 689
P+ R P SP T +P SPP PR G G ++ ++ + RG P+G P G
Sbjct: 354 PRQKRQAP-ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPR 412
Query: 690 ETNRRL*NVXRLGTAVRQAAXT-VPXVSGIPXGPXPXCXXGTXXXXTG 830
+++ R++ T P P G P T TG
Sbjct: 413 KSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTG 460
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Frame = +3
Query: 522 PKDFRAHPLNDSPGTLTPDVRSPPRSE-PR*GKGVTAVNTTTRQ---RGSPQGRPADGAF 689
P+ R P SP T +P SPP PR G G ++ ++ + RG P+G P G
Sbjct: 339 PRQKRQAP-ERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPR 397
Query: 690 ETNRRL*NVXRLGTAVRQAAXT-VPXVSGIPXGPXPXCXXGTXXXXTG 830
+++ R++ T P P G P T TG
Sbjct: 398 KSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSPPTG 445
>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical protein
F29C12.3 protein.
Length = 1631
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 420 GLKRRSEMVEASSAPLSRGVSSL-LSCKL*RTPSNPAYRRRSCPPVTIFVPRPV 262
GLK +E +EA L+ G+ L SC+L A+R R+C +T V PV
Sbjct: 1382 GLKITTEQLEAEGV-LADGIMELHFSCRLREKYHLTAFRVRACLQITRHVGDPV 1434
>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
protein F29C12.3 protein.
Length = 1631
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -3
Query: 420 GLKRRSEMVEASSAPLSRGVSSL-LSCKL*RTPSNPAYRRRSCPPVTIFVPRPV 262
GLK +E +EA L+ G+ L SC+L A+R R+C +T V PV
Sbjct: 1382 GLKITTEQLEAEGV-LADGIMELHFSCRLREKYHLTAFRVRACLQITRHVGDPV 1434
>AL022271-1|CAA18349.1| 919|Caenorhabditis elegans Hypothetical
protein F32F2.1 protein.
Length = 919
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 401 SDRLFKPHRPWAEPPTRFPRIRVRGVCETQRSAGVESSSRSQGF 532
S +L +P PP R + VC ++S G SSR+Q +
Sbjct: 97 SKKLIEPLPMIITPPVLMARTQCCAVCYKEKSTGYSVSSRTQSY 140
>AF099925-17|AAO38624.1| 462|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform c protein.
Length = 462
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 204 NGNLTGEQAKRFMLQSQ-LPPPVLGQIWSLADTNADGKLDLKEFS 335
+G LT ++AKR + L + AD N DG+LD EF+
Sbjct: 275 SGTLTLDEAKRVAFEHYGFDEATLAPFFGQADENEDGQLDNVEFA 319
>AF099925-16|AAC69511.1| 482|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform b protein.
Length = 482
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 204 NGNLTGEQAKRFMLQSQ-LPPPVLGQIWSLADTNADGKLDLKEFS 335
+G LT ++AKR + L + AD N DG+LD EF+
Sbjct: 275 SGTLTLDEAKRVAFEHYGFDEATLAPFFGQADENEDGQLDNVEFA 319
>AF099925-15|AAC69510.2| 585|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform a protein.
Length = 585
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 204 NGNLTGEQAKRFMLQSQ-LPPPVLGQIWSLADTNADGKLDLKEFS 335
+G LT ++AKR + L + AD N DG+LD EF+
Sbjct: 275 SGTLTLDEAKRVAFEHYGFDEATLAPFFGQADENEDGQLDNVEFA 319
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 204 NGNLTGEQAKRFMLQSQ-LPPPVLGQIWSLADTNADGKLDLKEFS 335
+G LT ++AKR + L + AD N DG+LD EF+
Sbjct: 275 SGTLTLDEAKRVAFEHYGFDEATLAPFFGQADENEDGQLDNVEFA 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,172
Number of Sequences: 27780
Number of extensions: 427025
Number of successful extensions: 1177
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -