Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L07
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40805| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_22138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       29   6.4  

>SB_40805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 326 SGXPTKXFRGHPAQVLQXXXXXX---VSNSVVCRSPKFHLKILPVSAPVDSDSRMLA 165
           SG     +R HP QV+Q         V N  + + P +  +ILP+ +PV    + LA
Sbjct: 2   SGRSRVWWRTHPIQVIQMKIVKHYKVVQNLAILKYPNYADQILPIPSPVGFARQQLA 58


>SB_22138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 255 FQLSRLS-IPQISFEDSASIRTGGLGLTNVSMSQMAGSG*LRFWS 124
           F+LS  S  P  S+ D   IR G +G+  +S  ++AGS     WS
Sbjct: 819 FELSGSSGYPSSSYRDVRVIRVGVIGMFELSEFELAGSSSYPSWS 863


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 154 GRVRLTTILESGGDSR---SYVARSESIMRDSDVAFSHSAALAIAQV 23
           GRV+LT  +  GG+SR   S VA   SI     +  SHS A+ IA +
Sbjct: 103 GRVQLTGDIHLGGNSRYAQSCVAVDGSIAPGGALIRSHSLAVVIAPI 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,021,263
Number of Sequences: 59808
Number of extensions: 283273
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)