BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BmNP01_FL5_L06 (909 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 43 4e-04 SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 42 5e-04 SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 42 0.001 SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 40 0.004 SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 40 0.004 SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 38 0.011 SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.011 SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 38 0.015 SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.045 SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.060 SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 36 0.060 SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14 SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.32 SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.42 SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 32 0.74 SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.3 SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.2 SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 30 2.2 SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2 SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 29 3.9 SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) 29 3.9 SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 5.2 SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 28 9.1 SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1 SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 9.1 SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) 28 9.1 >SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) Length = 373 Score = 42.7 bits (96), Expect = 4e-04 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Frame = +1 Query: 133 LLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 297 L TY+++ P D + V L L L ++ + T+ ++ ++ W D RL WN Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79 Query: 298 EW-GCSTWLVSSERLWRPDVVLLN 366 + G ++ + RLW PD+ L N Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYN 103 >SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) Length = 478 Score = 42.3 bits (95), Expect = 5e-04 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = +1 Query: 259 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 366 + W++ LSWNA E+G +T V +RLW PD+VL N Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYN 113 >SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) Length = 541 Score = 41.5 bits (93), Expect = 0.001 Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Frame = +1 Query: 121 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 285 ++ LL Y +++ P + + + L + LR ++ E + + I ++ W D L Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94 Query: 286 WNAGEWG-CSTWLVSSERLWRPDVVLLNAXAT 378 WN ++G + ++ +R+W+PDV+L N +T Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRAST 126 Score = 41.1 bits (92), Expect = 0.001 Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 6/88 (6%) Frame = +1 Query: 121 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 285 +++ L Y +++ P D + + L + LR ++ E E + ++ W D L Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512 Query: 286 WNAGEW-GCSTWLVSSERLWRPDVVLLN 366 WN ++ G + +++ +++W+PDV+L N Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540 >SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) Length = 342 Score = 39.5 bits (88), Expect = 0.004 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = +1 Query: 187 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 363 LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80 Query: 364 NA 369 N+ Sbjct: 81 NS 82 >SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) Length = 445 Score = 39.5 bits (88), Expect = 0.004 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = +1 Query: 238 RILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 369 +++ + + W + LSWNA E+ G S VS +R W PD++L N+ Sbjct: 16 KLIRIIAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60 >SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) Length = 79 Score = 37.9 bits (84), Expect = 0.011 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +1 Query: 232 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 366 T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78 >SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 724 Score = 37.9 bits (84), Expect = 0.011 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +1 Query: 232 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 366 T+R+ ++ W D +L W+ ++G +V ER +W PDVVLLN Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78 >SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) Length = 123 Score = 37.5 bits (83), Expect = 0.015 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%) Frame = +1 Query: 97 ENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQM 261 ++ L L+ D Y++ P D + V + + + + + ++L ++M Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86 Query: 262 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 366 NW + L WNA E+G L +S +W PD+VL N Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122 >SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) Length = 716 Score = 35.9 bits (79), Expect = 0.045 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%) Frame = +1 Query: 265 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NAXATTAGD-YALRAR 408 W + LSWNA E+ G S + ++LW+PD+ L NA ++ G Y +A+ Sbjct: 119 WKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAK 169 >SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) Length = 548 Score = 35.5 bits (78), Expect = 0.060 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +1 Query: 196 HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NA 369 HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L NA Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165 Query: 370 XATTAG 387 T AG Sbjct: 166 DETYAG 171 >SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) Length = 362 Score = 35.5 bits (78), Expect = 0.060 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +1 Query: 253 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 366 + + W D RL WN ++G +++ S +LW PD+ L N Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYN 314 >SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 686 Score = 34.3 bits (75), Expect = 0.14 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Frame = +1 Query: 205 HANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLN 366 H + + TV L W D L+WN ++ G + V +W PD+VL N Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYN 253 >SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) Length = 422 Score = 33.1 bits (72), Expect = 0.32 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +1 Query: 253 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAXAT 378 +++ W D L+WN ++G + V +W+PD++L N +T Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPAST 68 >SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 930 Score = 32.7 bits (71), Expect = 0.42 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = +1 Query: 253 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 366 L+M W D L WN ++G T + + + +W P V++ N Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYN 585 >SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) Length = 191 Score = 31.9 bits (69), Expect = 0.74 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +1 Query: 172 KIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRP 348 K +V LH + A + S S VR+ +++ W + L WN ++G T V+ +W P Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126 Query: 349 DVVLLN 366 D+VL N Sbjct: 127 DIVLYN 132 >SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 312 Score = 31.1 bits (67), Expect = 1.3 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +1 Query: 253 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 366 + + W + L+W+ +G T + V R+WRPD++L N Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYN 113 >SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) Length = 88 Score = 31.1 bits (67), Expect = 1.3 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Frame = +1 Query: 121 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 294 +++ LL YDR P + V +TL L T+ + D+ W + L+WN Sbjct: 15 LLEKLLTGYDRNERPVLNDNESVTVTLGL----------TLNQIVDVI--WYNPLLTWNV 62 Query: 295 GEWG-CSTWLVSSERLWRPDVVL 360 E+G T VS +W PD+VL Sbjct: 63 TEYGGLKTINVSPTIIWLPDIVL 85 >SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) Length = 434 Score = 30.3 bits (65), Expect = 2.2 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +1 Query: 256 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 366 + W D L W+ + G T + V LW+PD+VL N Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125 >SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) Length = 156 Score = 30.3 bits (65), Expect = 2.2 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Frame = +1 Query: 265 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLN 366 W ++ L+W+ E+G ST V+ +++W PD+ L N Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYN 36 >SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 705 Score = 30.3 bits (65), Expect = 2.2 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +1 Query: 253 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVL 360 + + W++ L+W+ +G T + V+ +W+PD+VL Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVL 100 >SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) Length = 275 Score = 29.5 bits (63), Expect = 3.9 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +1 Query: 253 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 366 + + W + ++WN E+G + + LW+PD+ L N Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYN 82 >SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 648 Score = 29.5 bits (63), Expect = 3.9 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = +1 Query: 265 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 366 W D L W+ ++ S + +W PDV L+N Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLIN 437 >SB_24860| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 137 Score = 29.5 bits (63), Expect = 3.9 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +1 Query: 145 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 309 YD+ P D+ V L + + N I E V + ++ NW D RL+ N + Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72 Query: 310 STWLVSSERLWRPDVVLLNAXA 375 + E++WRPD NA A Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94 >SB_14966| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00043) Length = 137 Score = 29.5 bits (63), Expect = 3.9 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +1 Query: 145 YDRESPP--DSKIVVNLTLHLRHAN---IRESESTVRILADLQMNWIDKRLSWNAGEWGC 309 YD+ P D+ V L + + N I E V + ++ NW D RL+ N + Sbjct: 14 YDKTERPGVDTGKPVELGVDIHFDNFGRIEEMNMEVDVFLYMRYNWKDPRLA-NFTDKTI 72 Query: 310 STWLVSSERLWRPDVVLLNAXA 375 + E++WRPD NA A Sbjct: 73 TFTRGDIEKVWRPDTYCSNAHA 94 >SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) Length = 428 Score = 29.1 bits (62), Expect = 5.2 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Frame = +1 Query: 253 LQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 366 + W D L WN G V +W PD+ L+N Sbjct: 28 IYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66 >SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) Length = 479 Score = 28.3 bits (60), Expect = 9.1 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +1 Query: 265 WIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAXATTAG 387 W + L WN +G + VS ++W PD+VL NA A+T G Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDG 82 >SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1758 Score = 28.3 bits (60), Expect = 9.1 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +1 Query: 244 LADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 366 + DLQ W + L+W+ ++G + V+ E +W PD+V+ N Sbjct: 1467 IVDLQ--WENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506 >SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) Length = 506 Score = 28.3 bits (60), Expect = 9.1 Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +1 Query: 235 VRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 369 + I+ + + W ++ L+W+ + G T + ++ +W PD+VL ++ Sbjct: 39 MEIVQIVNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDS 84 >SB_37132| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-06) Length = 229 Score = 28.3 bits (60), Expect = 9.1 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%) Frame = +1 Query: 100 NATSLSLMIDSLLATYDRESPPD-SKIVVNLTLHLRHANIRE-SESTVRILAD--LQMNW 267 NA +LS+ I+ LA+YDR+ P+ + V + + + + E E+ + D L+ W Sbjct: 15 NAHNLSVFINDALASYDRKVRPNYGGLPVMVLIEFKVISFGEIQEANMEYSFDIFLRQWW 74 Query: 268 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 366 D R N E + ++ W PD N Sbjct: 75 YDPRFKSNFTE-PFTMAADPTKMFWTPDTYFWN 106 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,528,633 Number of Sequences: 59808 Number of extensions: 333614 Number of successful extensions: 901 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 888 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2621784220 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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