Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L04
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 104 1e-23
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 92 1e-19
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 79 7e-16
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 77 3e-15
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 64 2e-11
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 62 1e-10
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 31 0.14
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 28 1.8
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 4.0
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 7.1
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 7.1
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 9.4
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 104 bits (250), Expect = 1e-23
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = +2
Query: 155 NQKLLQEL-QKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKL 331
N+ ++EL Q SGNN+CADC WAS+NLGIF+C+RCA+IHR +G H+SKVK + L
Sbjct: 6 NETAIRELVQSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISL 65
Query: 332 DRWEDSQVQRMKEVGNITARNKY 400
D W + Q+++MK GNI A N+Y
Sbjct: 66 DEWSNDQIEKMKHWGNINA-NRY 87
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 91.9 bits (218), Expect = 1e-19
Identities = 39/89 (43%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCL-NPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHL 325
+ N +L+ L + N VCADC N P WAS+NLG+FIC+RC+ +HR +G H+S+VK +
Sbjct: 10 ESNALVLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSV 69
Query: 326 KLDRWEDSQVQRMKEVGNITARNKYEERV 412
LD W D Q + M GN A +E ++
Sbjct: 70 DLDSWTDEQTENMTRWGNERANLYWEAKL 98
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 79.0 bits (186), Expect = 7e-16
Identities = 36/88 (40%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLK 328
+ +QKLL L+ + N VC DC +P W+S GI++C+ C++ HR MG HIS V+ L+
Sbjct: 6 EESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLR 65
Query: 329 ---LDRWEDSQVQRMKEVGNITARNKYE 403
LD W +Q++ M+ GN ARN ++
Sbjct: 66 STVLDSWTYAQLRVMRVGGNENARNYFK 93
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 77.0 bits (181), Expect = 3e-15
Identities = 33/75 (44%), Positives = 46/75 (61%)
Frame = +2
Query: 167 LQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWED 346
L +L + N C DC P+P WAS NLGIFIC+ C+ HRG+G S V+ + +D W +
Sbjct: 5 LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSE 64
Query: 347 SQVQRMKEVGNITAR 391
QV+ M+ GN A+
Sbjct: 65 RQVKMMEVGGNSNAK 79
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +2
Query: 167 LQELQKRS-GNNVCADCLN-PDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRW 340
+Q L+K N+VCADC + D W S N+ + +C+ C+ IHR +G HISK + L LD
Sbjct: 717 IQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLLDSL 776
Query: 341 EDSQVQRMKEVGNITARNKYEE 406
+ ++GN YE+
Sbjct: 777 SQQSKVLLCKIGNAAVNRVYEK 798
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 61.7 bits (143), Expect = 1e-10
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +2
Query: 161 KLLQELQKRSGNNVCADC-LNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDR 337
K L+E+ S + CADC +W + N + +C+ C+ IHR +G HI+K++ L LD+
Sbjct: 674 KTLKEMH--SSDQSCADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIRSLTLDK 731
Query: 338 WEDSQVQRMKEVGNITARNKYEERVPPW 421
+ V + GN YE + W
Sbjct: 732 FNPETVDLLYATGNSFVNEIYEGGITDW 759
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 31.5 bits (68), Expect = 0.14
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGM---GAHISKVK 319
D N KLL+ ++ NVC D N + G C C + M S++K
Sbjct: 159 DKNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDYYTMCIQEGMFSQIK 218
Query: 320 HLKLDRWEDSQVQRMKEVGNITA---RNKYEE 406
+ LD +D+ V +KE+ +I N+Y+E
Sbjct: 219 CIDLDCGKDAPVLTLKELESIVGVQLTNRYKE 250
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 204 HTLFPLRFCNSCNNFWLWSTI 142
H ++PL CN N+ +W+T+
Sbjct: 49 HAVYPLAACNRLTNYNVWATV 69
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 250 WDIHMHAMCEHPPWHGRSYQQSETFEAG 333
W+I H M H W S Q+E E+G
Sbjct: 89 WNIAGHFMFSHKIWEDLSLPQNELLESG 116
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 32 RSVPQTAFVRAVRLSSGDATYASGKRACLHY*CKTSTMVDHNQKLLQELQKRS 190
R P+ V ++GD + G A +H C S + D QKL Q + +
Sbjct: 247 RFTPRDGKPPVVNGTNGDQSDYFGANAAVHGLCLLSQVPDQQQKLQQPISSEN 299
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 191 GNNVCADCLNPDPDWASYNLGIFI 262
G + +C DP SYN+GIF+
Sbjct: 226 GADTSTNCTTLDPSQWSYNIGIFM 249
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 275 HIACI*ISQGYKKPSLGQDLNSRRTRYF-HSVFAT 174
HI C+ S +KPSL Q L + R + FAT
Sbjct: 427 HIGCVVTSPSNEKPSLSQRLGDSQFRLTKRNTFAT 461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,635
Number of Sequences: 5004
Number of extensions: 46175
Number of successful extensions: 88
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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