Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L04
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   1e-19
SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)                48   9e-06
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_54059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/90 (46%), Positives = 57/90 (63%)
 Frame = +2

Query: 146 VDHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHL 325
           ++ N+  L EL KR GNN CADC    P+WAS + GIFIC+ C+ +HR +G  IS VK L
Sbjct: 1   MEKNRNALLELAKRPGNNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVKSL 60

Query: 326 KLDRWEDSQVQRMKEVGNITARNKYEERVP 415
           +LD W D ++Q M E GN  +   + + VP
Sbjct: 61  RLDTWTDERLQFMIENGNEKSNAIWAKNVP 90


>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 29/72 (40%), Positives = 49/72 (68%)
 Frame = +2

Query: 164 LLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWE 343
           +++++Q+  GN+ CADC + DP W S NLG+  C+ C+ +HRGMG H+S+V+ + LD   
Sbjct: 88  IVKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQSITLDNIG 147

Query: 344 DSQVQRMKEVGN 379
            +++   K +GN
Sbjct: 148 TAELLLAKAIGN 159


>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +2

Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLK 328
           + N K+L++L  +  N  C DC    P + +  +G F+C  C+ I RG+     +VK + 
Sbjct: 10  EKNLKILRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGLNPP-QRVKSIS 68

Query: 329 LDRWEDSQVQRMKEVGN 379
           +  +   +++ ++  GN
Sbjct: 69  MTSFTPQEIEYLQGAGN 85


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +2

Query: 287 RGMGAHISKVKHLKLDRWEDSQVQRMKEVGNITARNKYEERV 412
           R +G H+SKV+ L LD WE   ++ M E+GN    + YE ++
Sbjct: 299 RSLGVHVSKVRSLTLDAWEPEHLKLMSELGNSLINSIYEAKI 340


>SB_54059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 248 LGIFICMRCASIHRGMGAHISKVKHLKLD 334
           +G+ +  R  ++H G+  + S+ KH+K+D
Sbjct: 47  IGVSVYKRFLNMHPGLQTYFSEFKHIKID 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,575,788
Number of Sequences: 59808
Number of extensions: 383633
Number of successful extensions: 911
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)