Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L04
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 99 2e-21
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 99 2e-21
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 99 2e-21
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 99 2e-21
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 96 3e-20
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 95 5e-20
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 94 8e-20
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 94 1e-19
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 91 1e-18
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 87 9e-18
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 87 1e-17
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 85 5e-17
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 81 1e-15
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 80 2e-15
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 77 2e-14
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 75 7e-14
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 75 7e-14
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 74 1e-13
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 49 3e-06
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 49 3e-06
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 48 5e-06
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 48 5e-06
At3g23480.1 68416.m02958 cyclopropane fatty acid synthase-relate... 31 1.2
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 99 bits (238), Expect = 2e-21
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 158 QKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDR 337
++ +++L +S N VCADC PDP WAS N+G+FIC++C +HR +G+HISKV + LD
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 338 WEDSQVQRMKEV-GNITARNKYEERVP 415
W D +V M E+ GN +A + YE +P
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIP 101
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 99 bits (238), Expect = 2e-21
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 158 QKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDR 337
++ +++L +S N VCADC PDP WAS N+G+FIC++C +HR +G+HISKV + LD
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 338 WEDSQVQRMKEV-GNITARNKYEERVP 415
W D +V M E+ GN +A + YE +P
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIP 101
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 99 bits (238), Expect = 2e-21
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 158 QKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDR 337
++ +++L +S N VCADC PDP WAS N+G+FIC++C +HR +G+HISKV + LD
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 338 WEDSQVQRMKEV-GNITARNKYEERVP 415
W D +V M E+ GN +A + YE +P
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIP 101
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 99 bits (238), Expect = 2e-21
Identities = 41/87 (47%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Frame = +2
Query: 158 QKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDR 337
++ +++L +S N VCADC PDP WAS N+G+FIC++C +HR +G+HISKV + LD
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 338 WEDSQVQRMKEV-GNITARNKYEERVP 415
W D +V M E+ GN +A + YE +P
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIP 101
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 95.9 bits (228), Expect = 3e-20
Identities = 42/88 (47%), Positives = 56/88 (63%)
Frame = +2
Query: 155 NQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLD 334
++K+L+ L K N CADC P WAS NLGIFICM+C+ IHR +G HISKV+ LD
Sbjct: 15 HRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLD 74
Query: 335 RWEDSQVQRMKEVGNITARNKYEERVPP 418
W QV ++ +GN A + +E +PP
Sbjct: 75 TWLPEQVAFIQSMGNDKANSYWEAELPP 102
>At3g17660.1 68416.m02255 human Rev interacting-like family protein
/ hRIP family protein similar to ARF GAP-like zinc
finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/87 (47%), Positives = 53/87 (60%)
Frame = +2
Query: 155 NQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLD 334
+ K+L+ L K N CADC + P WAS NLGIFICM+C+ IHR +G HIS+V+ + LD
Sbjct: 15 HSKILEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLD 74
Query: 335 RWEDSQVQRMKEVGNITARNKYEERVP 415
W QV MK GN +E +P
Sbjct: 75 TWLPDQVAFMKSTGNAKGNEYWESELP 101
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 94.3 bits (224), Expect = 8e-20
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +2
Query: 167 LQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWED 346
L++L K+ GN CADC +P+P W S +LG+FIC++C+ +HR +G HISKV +KLD W D
Sbjct: 50 LEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVKLDEWTD 109
Query: 347 SQVQRMKEVGNITARNK 397
QV + G TA N+
Sbjct: 110 DQVDMLVGYGGNTAVNE 126
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 93.9 bits (223), Expect = 1e-19
Identities = 39/87 (44%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Frame = +2
Query: 158 QKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDR 337
++ +++L + N VCADC DP WAS N+G+FIC++C +HR +G HISKV + LD
Sbjct: 15 KRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDE 74
Query: 338 WEDSQVQRMKEV-GNITARNKYEERVP 415
W D +V M E+ GN +A + YE +P
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFLP 101
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 90.6 bits (215), Expect = 1e-18
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = +2
Query: 158 QKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLD- 334
+K + L+K GN+ CADC P+PDWAS NLG+ +C+ C+ +HR +G HISKV+ L LD
Sbjct: 442 EKPIDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 501
Query: 335 -RWEDSQVQRMKEVGNITARNKYEE 406
WE S + + +GN A +EE
Sbjct: 502 KVWEPSVISLFQALGNTFANTVWEE 526
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 87.4 bits (207), Expect = 9e-18
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Frame = +2
Query: 158 QKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLD- 334
+K + L + GN CADC P+PDWAS NLG+ IC+ C+ IHR +G HISKV+ L LD
Sbjct: 520 EKPIDVLTRVLGNERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLTLDV 579
Query: 335 -RWEDSQVQRMKEVGNITARNKYEE 406
WE S + + +GN+ + +EE
Sbjct: 580 KVWEPSVLTLFQSLGNVYVNSVWEE 604
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 87.0 bits (206), Expect = 1e-17
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
Frame = +2
Query: 149 DHNQKL------LQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHIS 310
D+NQ+L L L++ GNN CA+C PDPDWAS NLG+ +C+ C+ +HR +G HIS
Sbjct: 458 DYNQRLNVGDDVLTILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHIS 517
Query: 311 KVKHLKLD--RWEDSQVQRMKEVGNITARNKYEE 406
KV+ L LD WE + + + +GN + +EE
Sbjct: 518 KVRSLTLDVKVWEPTILDLFRNLGNGYCNSVWEE 551
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 85.0 bits (201), Expect = 5e-17
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Frame = +2
Query: 191 GNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLD--RWEDSQVQRM 364
GNN CA+C P+PDWAS NLG+ +C++C+ +HR +G HISKV+ L LD WE + +
Sbjct: 478 GNNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVKVWEPTILDLF 537
Query: 365 KEVGNITARNKYE 403
+ +GN+ + +E
Sbjct: 538 RNLGNVYCNSLWE 550
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/76 (42%), Positives = 47/76 (61%)
Frame = +2
Query: 167 LQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWED 346
L+ LQ + N VC DC +P WAS + GIF+C+ C+ HRG+G HIS V+ + +D W +
Sbjct: 7 LRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSE 66
Query: 347 SQVQRMKEVGNITARN 394
Q+++M GN N
Sbjct: 67 IQIKKMDAGGNERLNN 82
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 79.8 bits (188), Expect = 2e-15
Identities = 31/71 (43%), Positives = 46/71 (64%)
Frame = +2
Query: 167 LQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWED 346
L+ LQ + N VC DC +P WAS + GIF+C+ C+ HRG+G HIS V+ + +D W
Sbjct: 7 LRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSA 66
Query: 347 SQVQRMKEVGN 379
Q+++M+ GN
Sbjct: 67 IQIKKMEAGGN 77
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 76.6 bits (180), Expect = 2e-14
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +2
Query: 134 TSTMVDHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISK 313
T + D N + ++L+ +S N VC DC +P WAS GIF+C+ C+++HR +G HIS
Sbjct: 3 TENLTDKNV-VFRKLKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISF 61
Query: 314 VKHLKLDRWEDSQVQRMKEVGNITAR 391
V+ LD W Q++ M GN A+
Sbjct: 62 VRSTNLDSWSPEQLRTMMFGGNNRAQ 87
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 74.5 bits (175), Expect = 7e-14
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +2
Query: 164 LLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWE 343
+ ++L+ +S N +C DC +P WAS GIF+C+ C+++HR +G HIS V+ LD W
Sbjct: 12 VFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
Query: 344 DSQVQRMKEVGNITAR 391
Q++ M GN A+
Sbjct: 72 SEQLKMMIYGGNNRAQ 87
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 74.5 bits (175), Expect = 7e-14
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +2
Query: 164 LLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWE 343
+ ++L+ +S N +C DC +P WAS GIF+C+ C+++HR +G HIS V+ LD W
Sbjct: 12 VFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWS 71
Query: 344 DSQVQRMKEVGNITAR 391
Q++ M GN A+
Sbjct: 72 SEQLKMMIYGGNNRAQ 87
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 73.7 bits (173), Expect = 1e-13
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = +2
Query: 164 LLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLKLDRWE 343
+ ++L+ +S N VC DC +P WAS GIF+C+ C++ HR +G HIS V+ LD W
Sbjct: 15 VFRKLKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWS 74
Query: 344 DSQVQRMKEVGNITAR 391
Q++ M GN A+
Sbjct: 75 PEQLRTMMFGGNNRAQ 90
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLK 328
+ N+K+++ L K N C +C + P + F+CM C+ IHR H +VK +
Sbjct: 9 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-TH--RVKSVS 65
Query: 329 LDRWEDSQVQRMKEVGNITARNKY 400
+ ++ +V+ ++ GN AR Y
Sbjct: 66 MSKFTSKEVEVLQNGGNQRAREIY 89
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLK 328
+ N+K+++ L K N C +C + P + F+CM C+ IHR H +VK +
Sbjct: 9 ERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-TH--RVKSVS 65
Query: 329 LDRWEDSQVQRMKEVGNITARNKY 400
+ ++ +V+ ++ GN AR Y
Sbjct: 66 MSKFTSKEVEVLQNGGNQRAREIY 89
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLK 328
+ N+K+++ L K N C +C + P + F+C C+ IHR H +VK +
Sbjct: 9 EKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-TH--RVKSIS 65
Query: 329 LDRWEDSQVQRMKEVGNITARNKY 400
+ ++ +V +KE GN A++ Y
Sbjct: 66 MAKFTSQEVTALKEGGNQHAKDIY 89
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +2
Query: 149 DHNQKLLQELQKRSGNNVCADCLNPDPDWASYNLGIFICMRCASIHRGMGAHISKVKHLK 328
+ N+K+++ L K N C +C + P + F+C C+ IHR H +VK +
Sbjct: 9 EKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-TH--RVKSIS 65
Query: 329 LDRWEDSQVQRMKEVGNITARNKY 400
+ ++ +V +KE GN A++ Y
Sbjct: 66 MAKFTSQEVTALKEGGNQHAKDIY 89
>At3g23480.1 68416.m02958 cyclopropane fatty acid synthase-related
similar to cyclopropane synthase [Sterculia foetida]
GI:21069167
Length = 513
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 420 QGGTRSSYLFLAVMFPTSFILCTCESSHLSSFKCF 316
Q G SS + +V FP SFI+C HL F CF
Sbjct: 463 QTGNVSSNVVFSVCFPLSFIICKRLPRHLKQF-CF 496
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,151
Number of Sequences: 28952
Number of extensions: 279903
Number of successful extensions: 568
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -