Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L02
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 32 0.48
07_01_0373 + 2783596-2784933 32 0.63
09_04_0506 - 18188785-18190599 29 3.4
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 3.4
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.4
04_03_0174 + 12263843-12265126 29 4.5
04_01_0041 - 464695-464850,467485-469029 29 5.9
01_05_0227 - 19512866-19514983 29 5.9
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 7.8
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 32.3 bits (70), Expect = 0.48
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 534 HPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSPERRTXREFAPGL-KPPVVIRGSI-SV 707
HPP + + + NPR + NH RL+ + RR + A + PP +R +I +V
Sbjct: 119 HPPPQSAGDLSAARNPRGAHFNHRRLHHPPIRLKHRRDGEQPANVVAMPPSKLRKAIGAV 178
Query: 708 SHPSSLGMAKXG 743
+S+G+AK G
Sbjct: 179 KDQTSIGLAKVG 190
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3
Query: 92 EEEKALTKEGMAEAAETXKGTIXSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>09_04_0506 - 18188785-18190599
Length = 604
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 566 PIIKSPNSIHQPPQT*HPFPSIP*TPYXKGVRAGVKASGCHQRLHQRI--SPLVTGHG*X 739
P+ PN +H PPQ P + P P ++ G G H++ P+V G+G
Sbjct: 120 PVPDRPNPVHLPPQPQPPVAAAPPPPPHNQIQPG-GGDGFHRQGGGNYGGGPIVVGNGGG 178
Query: 740 GFRP 751
G P
Sbjct: 179 GDGP 182
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +1
Query: 400 PSLKIPVTVDL--CWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSR--LHQP 567
P KIP +++ C T+ D T ++ S+ +ITIG L L+ + WR R LH+P
Sbjct: 220 PGSKIPCNLEVSDCLTSHDGTSA-----SSSSNEKITIGLLFLLQKLCKNWRLRRFLHRP 274
Query: 568 DHQIPEFHTPTTPD 609
+I TP D
Sbjct: 275 -RRISNGTTPVFDD 287
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_03_0174 + 12263843-12265126
Length = 427
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 624 HQSPERRTXREFAPGLKPPVVIRGSISVSHPSSLGMAKXGFAP 752
H +P RT AP L PV++ GS S + P +LG+ + +P
Sbjct: 119 HDAPPHRTAS--APSL--PVLVSGSASAAPPVTLGLPRSASSP 157
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,887,489
Number of Sequences: 37544
Number of extensions: 475511
Number of successful extensions: 1276
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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