Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L02
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.65 
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    31   1.1  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    30   2.6  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.4  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   4.6  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   4.6  
SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)                28   8.0  

>SB_35609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 525 ASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSP-ERRTXREFAPGLKPPVVI 689
           ASS   L+ +ATST +S+P  P   HP  N+ FH SP   R+   F   + P  +I
Sbjct: 73  ASSSLALSFAATSTSTSHPLTPSFGHPP-NL-FHISPHSMRSADHFPTNMDPSSLI 126


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 414 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLAI 551
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PL I
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLRI 138


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -2

Query: 609 VWGGWCMEFGDLMIGLM*PRSPGEGGLMHKGE 514
           + GG C  +G+L I ++  ++PG  G++ KG+
Sbjct: 558 IGGGMCSPYGNLPIHILDIQNPGISGVLRKGD 589


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -2

Query: 456 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 277
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 276 KIE 268
           + E
Sbjct: 335 EEE 337


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 394 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 504
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +1

Query: 268 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 375
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_57242| Best HMM Match : Extensin_2 (HMM E-Value=2.4)
          Length = 308

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 483 PFILSHYYWRSRPYASSHPPLAISA-TSTRSSNPRIPYTNHPRLNIHFHQSPERRT 647
           P +LS+     RP    +P L  S  TST S++PRIPY+    L     Q+ E RT
Sbjct: 78  PLVLSYLDPLGRP---ENPVLLWSCLTSTHSADPRIPYSFGRVLPRPTRQTRESRT 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,125,726
Number of Sequences: 59808
Number of extensions: 490700
Number of successful extensions: 1380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)