Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L02
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   1.3  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   1.3  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   3.0  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      29   3.0  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    29   4.0  
U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        29   4.0  
L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protei...    29   4.0  
L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protei...    29   4.0  

>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 483 PFILSHYYWRSRPYASSH-PPLAIS---ATSTRSSNPRIPYTNHPRLNIHFHQSPERRTX 650
           P  + H++    P+ASSH  P+        +  SS P+I  +N P        +PE R  
Sbjct: 242 PTRMPHHHHHHHPHASSHYNPMGFQNHHEEAVISSAPQINRSNEPAAPATLSAAPELRNL 301

Query: 651 REFAPGLKPPVVIR 692
           R     L P  ++R
Sbjct: 302 RRETVKLVPAQLLR 315


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
            K04G2.8b protein.
          Length = 1188

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 807  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 866

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 867  YLEPEPERRSHS 878


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
            K04G2.8a protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 357
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSCQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
           protein F43G9.6 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 675 PPVVIRGSISVSHPSSLGMAKXGFAPLFQVNDESQA 782
           PPV+I+    +SH   +G AK   + +FQ +DE+Q+
Sbjct: 648 PPVLIK---MMSHGKLIGFAKIPISEIFQSDDEAQS 680


>U97014-1|AAB52425.1|  893|Caenorhabditis elegans Hypothetical
           protein T05E8.1 protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 675 PPVVIRGSISVSHPSSLGMAKXGFAPLFQVNDESQA 782
           PPV+I+    +SH   +G AK   + +FQ +DE+Q+
Sbjct: 615 PPVLIK---MMSHGKLIGFAKIPISEIFQSDDEAQS 647


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 675 PPVVIRGSISVSHPSSLGMAKXGFAPLFQVNDESQA 782
           PPV+I+    +SH   +G AK   + +FQ +DE+Q+
Sbjct: 648 PPVLIK---MMSHGKLIGFAKIPISEIFQSDDEAQS 680


>L23648-5|AAN63385.1|  381|Caenorhabditis elegans Cyclin t protein
           1.2, isoform b protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 516 RPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSPERRTXR 653
           RP +SSHP    S +S+ S+N      +   L+ H HQ P     R
Sbjct: 195 RPSSSSHPLHHHSTSSSASNNSNHQNRSSSGLSAHQHQKPYNEDSR 240


>L23648-4|AAA28033.2|  555|Caenorhabditis elegans Cyclin t protein
           1.2, isoform a protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 516 RPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSPERRTXR 653
           RP +SSHP    S +S+ S+N      +   L+ H HQ P     R
Sbjct: 369 RPSSSSHPLHHHSTSSSASNNSNHQNRSSSGLSAHQHQKPYNEDSR 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,557
Number of Sequences: 27780
Number of extensions: 359186
Number of successful extensions: 1034
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)