Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_L02
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family...    33   0.23 
At2g30400.1 68415.m03702 ovate family protein 57% similar to ova...    31   0.70 
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr...    30   1.6  
At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    29   2.8  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   8.6  
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    28   8.6  
At2g17700.1 68415.m02050 protein kinase family protein similar t...    28   8.6  
At1g22275.1 68414.m02784 expressed protein                             28   8.6  

>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
           protein
          Length = 421

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 483 PFILSHYYWRSRPYASSHPPLAISATSTRSSNPRIPYTNHPRLNI 617
           P   SHY      Y+S H   A S+TS  S+ P  PY+++ R+NI
Sbjct: 308 PHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAPPPPPYSSNGRINI 352


>At2g30400.1 68415.m03702 ovate family protein 57% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 320

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
 Frame = +3

Query: 510 RSRPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSPERRTXREFAPGLK----P 677
           + +P + S P  +  + S  ++NP  P+ N PR ++H  +  +R+T   + P LK    P
Sbjct: 43  KKKPSSDSLPQHSYFSNSLVANNP--PHHNSPRNSLHTKKMSKRKTL--YKPSLKPLTPP 98

Query: 678 PVVIRGSISVS 710
           P+++  S + S
Sbjct: 99  PLLVSASFNKS 109


>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 514 LALMHQATL--PWRSRLHQPDHQIPEFHTPTTPDLTSISINP 633
           LAL+   TL  PW    + P H++PEFH+P   +      NP
Sbjct: 92  LALLSLQTLEKPWELENYLP-HEVPEFHSPIHSETNHYYHNP 132


>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +3

Query: 489 ILSHYYWRSRPYASSHPPLAISATSTRSSNPRIPYTNHPRLNIHFHQSPERR 644
           ++SHY     P A++ P +  ++TS    +PR+P+ N  +    FHQ  +++
Sbjct: 20  LMSHY---RNPNAAASPLMVPTSTSQPIQHPRLPFGNQQQSQT-FHQQQQQQ 67


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 313 QSLPNVSSIIKGYRDAY 363
           QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 527 IKPPSPGDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPYXK 652
           +KPP+        P  K P S  +PP T  P PS P  P+ K
Sbjct: 117 VKPPTKPPPSTPKPPTKPPPSTPKPPTT-KPPPSTPKPPHHK 157


>At2g17700.1 68415.m02050 protein kinase family protein similar to
           protein kinase [gi:170047] from Glycine max; contains a
           protein kinase domain profile (PDOC00100) (PF00069)
          Length = 546

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 519 PYASSHPPLAISATSTRSSNPRIPYTNHPR----LNIHFHQSPERR 644
           PYA   P  A      +   P+IP   HP+    L   +HQ PE+R
Sbjct: 480 PYAFLTPLQAAVGVVQKGLRPKIPKKTHPKVKGLLERCWHQDPEQR 525


>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 570 SSNPRIPYTNHPRLNIHFHQSPERRTXREFAPGLKPPVVIRGSISVSHPSS 722
           ++N RIP     R    F Q P+RR+ R     + P ++ + +    HP S
Sbjct: 784 TNNGRIPKRRKTRQTTMF-QEPQRRSTRLTPKLMTPTIIAKETAMADHPHS 833


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,994,945
Number of Sequences: 28952
Number of extensions: 361250
Number of successful extensions: 986
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)