Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_L01
(843 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 399 e-110
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 366 e-100
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 288 1e-76
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 246 5e-64
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 222 1e-56
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 166 5e-40
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 120 6e-26
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 118 2e-25
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 108 1e-22
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 108 2e-22
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 105 2e-21
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 104 3e-21
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 98 3e-19
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 98 3e-19
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 95 1e-18
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 95 2e-18
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 92 2e-17
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 90 6e-17
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 88 2e-16
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 86 1e-15
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 85 3e-15
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 84 5e-15
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 77 4e-13
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 68 3e-10
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.078
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 37 0.55
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.7
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 35 2.9
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 5.1
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3; ... 33 6.8
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 33 6.8
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.0
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 399 bits (982), Expect = e-110
Identities = 177/264 (67%), Positives = 209/264 (79%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+MEIQ+
Sbjct: 126 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 590 NGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTH 769
NGGT+ +K+ WARE LE+ +PV+ VF QDEMID I SRWHTKKLP KTH
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTH 245
Query: 770 KGLRKVACIGAWHPSRVSSLVXRA 841
+GLRKVACIGAWHP+RV+ V RA
Sbjct: 246 RGLRKVACIGAWHPARVAFSVARA 269
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 366 bits (900), Expect = e-100
Identities = 165/264 (62%), Positives = 197/264 (74%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHIMEIQL
Sbjct: 126 KKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQL 185
Query: 590 NGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTH 769
NGGT+ +KV WA+ LEK +PV SVF Q E+ID I SRWHTKKLP KTH
Sbjct: 186 NGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTH 245
Query: 770 KGLRKVACIGAWHPSRVSSLVXRA 841
KGLRKVACIGAWHP+RV + RA
Sbjct: 246 KGLRKVACIGAWHPARVGCSIARA 269
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 288 bits (706), Expect = 1e-76
Identities = 136/267 (50%), Positives = 175/267 (65%), Gaps = 3/267 (1%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHIME 580
+ GR + + K + ++RV+AHTQ++ L+ + KKAH+ E
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSE 236
Query: 581 IQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPG 760
IQ+NGGTI K++ A+ LEK + +DSVF Q E D RW LP
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPR 296
Query: 761 KTHKGLRKVACIGAWHPSRVSSLVXRA 841
KTH+GLRKVACIGAWHPSRV V RA
Sbjct: 297 KTHRGLRKVACIGAWHPSRVMYTVARA 323
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 246 bits (602), Expect = 5e-64
Identities = 107/163 (65%), Positives = 127/163 (77%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 538
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 78.6 bits (185), Expect = 2e-13
Identities = 37/60 (61%), Positives = 39/60 (65%)
Frame = +2
Query: 662 VFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTHKGLRKVACIGAWHPSRVSSLVXRA 841
V +MID I SRWHTKKLP KTHKGLRKVACIGAWHPSRV+ V RA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 222 bits (542), Expect = 1e-56
Identities = 117/259 (45%), Positives = 157/259 (60%)
Frame = +2
Query: 47 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 226
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 227 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 406
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKNW+
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHS 124
Query: 407 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 586
++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+MEIQ
Sbjct: 125 EKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQ 178
Query: 587 LNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKT 766
+ G + W RE + QDE+ID I + P +
Sbjct: 179 VMG---HCGLSW-REAVN----------QDEIIDVIKETKGNGYKGVTRVDIQRNCPERP 224
Query: 767 HKGLRKVACIGAWHPSRVS 823
+G K+ C+GAWHP+RV+
Sbjct: 225 IEGCPKL-CVGAWHPARVT 242
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 166 bits (404), Expect = 5e-40
Identities = 97/235 (41%), Positives = 133/235 (56%)
Frame = +2
Query: 92 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 271
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 272 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 451
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 452 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 631
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 632 HLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTHKGLRKVACI 796
LE+ +PV+ +F + I S W+TKK+P KTH+ + ACI
Sbjct: 156 KLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI 209
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 120 bits (288), Expect = 6e-26
Identities = 86/271 (31%), Positives = 126/271 (46%), Gaps = 10/271 (3%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK----- 394
KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKM 122
Query: 395 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKA 568
+Y + E+ + + + + MI+ + VR I TQ ++K + KK
Sbjct: 123 TFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK-KKP 180
Query: 569 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTK 748
+ME + G ++E+K + +E L K + V V + E++D I RW K
Sbjct: 181 EVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIK 240
Query: 749 KLPGKTHKGLRKVACIGAWHPSRVSSLVXRA 841
K KG RKV IG WHP+RV V A
Sbjct: 241 LRAHKDSKGRRKVGSIGPWHPARVMWTVPMA 271
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 118 bits (283), Expect = 2e-25
Identities = 83/262 (31%), Positives = 130/262 (49%), Gaps = 4/262 (1%)
Frame = +2
Query: 47 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 226
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 227 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 400
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI---- 115
Query: 401 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIME 580
+ RK++E D + + VRV+ HT KL +KK I+E
Sbjct: 116 -------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILE 161
Query: 581 IQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPG 760
I++ G IE+++ +A+E L K + + VF + E++D I RW K G
Sbjct: 162 IRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFG 221
Query: 761 K-THKGL-RKVACIGAWHPSRV 820
K KG+ R V IG W P V
Sbjct: 222 KHARKGVGRHVGSIGPWQPKMV 243
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 108 bits (260), Expect = 1e-22
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 7/268 (2%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 412
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 413 XXXXXXXXXXWQDELGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 577
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 578 EIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLP 757
E+ L GG K++WA E L I +D V+ + +D + R+ K L
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLS 245
Query: 758 GKTHKGLRKVACIGAWHPSRVSSLVXRA 841
K K R++ +G + V + +A
Sbjct: 246 HKNSKRRRQIGNMGDFGTGYVRKTIRQA 273
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 108 bits (259), Expect = 2e-22
Identities = 86/249 (34%), Positives = 125/249 (50%), Gaps = 6/249 (2%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRRFYKNWYXXX 412
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------- 119
Query: 413 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLL-KQRQKKAHIMEIQL 589
+ + KS+E+ K VR+IA +Q KL +KK ++EI++
Sbjct: 120 -----STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKKPDLLEIKV 170
Query: 590 NGGTIEDKV-KWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLP--G 760
G + K+ +A++ L I V+ VF + +++D I RW K+LP
Sbjct: 171 GGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWH 230
Query: 761 KTHKGLRKV 787
K KG R++
Sbjct: 231 KHRKGSRRI 239
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 105 bits (251), Expect = 2e-21
Identities = 79/262 (30%), Positives = 117/262 (44%), Gaps = 1/262 (0%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-KLLKQRQKKAHIMEIQLNG 595
D+L + + VR+I +Q K+ K IME+ L G
Sbjct: 123 RKEHDANAHLDKLRESDLAE-----------VRLIVSSQPDKVSAVGSKSPEIMEMGLTG 171
Query: 596 GTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTHKG 775
G + ++ WA E L + + ++ VF ID I R+ K L K K
Sbjct: 172 GDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKR 231
Query: 776 LRKVACIGAWHPSRVSSLVXRA 841
R++ +G + V + +A
Sbjct: 232 RRQIGNMGDFGTGYVRKTIRQA 253
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 104 bits (249), Expect = 3e-21
Identities = 84/263 (31%), Positives = 117/263 (44%), Gaps = 5/263 (1%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 595
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 596 GTIEDKVKWAREHLEK--PIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGK-T 766
GT+ D++++A + +E VF E D RW +K GK
Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHA 226
Query: 767 HKG-LRKVACIGAWHPSRVSSLV 832
+G R++ +G W+PSRV S V
Sbjct: 227 RQGWRRRIGNLGPWNPSRVRSTV 249
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 97.9 bits (233), Expect = 3e-19
Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 1/262 (0%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-YKNWYXXXX 415
K++V T++ TPP++ +G+ GY + GL A V+AE + + + KN
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISLKN------ 121
Query: 416 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 595
+ E + EK KK+ ++V I+ + L QKK +I E ++G
Sbjct: 122 ----------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPYIFEASVSG 167
Query: 596 GTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTHKG 775
G I + +E L K I +D +F +D RW+ KK K+ K
Sbjct: 168 GDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKT 227
Query: 776 LRKVACIGAWHPSRVSSLVXRA 841
+R+V +G P V V RA
Sbjct: 228 VREVGSLGPISPQSVMYTVPRA 249
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 97.9 bits (233), Expect = 3e-19
Identities = 77/264 (29%), Positives = 114/264 (43%), Gaps = 3/264 (1%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 598
+EL + I ++ +RVI TQ K +KK +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 599 TIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKT---H 769
+ ++ ++A E L + I VF + E++D RW KT
Sbjct: 174 DVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQ 233
Query: 770 KGLRKVACIGAWHPSRVSSLVXRA 841
KG R + IG PSRV V A
Sbjct: 234 KG-RHIGSIGPITPSRVRWTVPMA 256
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 95.5 bits (227), Expect = 1e-18
Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 2/254 (0%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 598
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 599 TIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLP--GKTHK 772
E + A E L K + + VF + + ID I R+ +++P K K
Sbjct: 166 PPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHRK 225
Query: 773 GLRKVACIGAWHPS 814
G ++ +G P+
Sbjct: 226 GHSRIGSVGPQKPA 239
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 95.1 bits (226), Expect = 2e-18
Identities = 55/157 (35%), Positives = 76/157 (48%)
Frame = -3
Query: 808 MPXSNAGNFPKXXXXXXXXXXXVPTRSDTFVSFALGDTNAVNHFILXKHRIDRDRFLQMF 629
MP +N N + P+ DT + GD+N +NHFIL ++R++R+ F ++F
Sbjct: 19 MPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVF 78
Query: 628 SGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHLLEIFFY*FASKLI 449
GP +FV DGTTV LDF V V DS N +V + F F +
Sbjct: 79 FGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV 138
Query: 448 LPFLTGFSESLLLAFVPVFVEATSTVFRHMLRPDSQQ 338
F F E LL F+PV VE++S F + PDS Q
Sbjct: 139 --FTRVFGEGFLLGFIPVLVESSSDFFTQVFSPDSGQ 173
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 91.9 bits (218), Expect = 2e-17
Identities = 64/254 (25%), Positives = 117/254 (46%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 418
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------- 110
Query: 419 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 598
++++ ++ F V++I TQ +K + K I +I + G
Sbjct: 111 ---LKNYNFEEK------KEQFLSKADNADEVKIIVSTQPWKIKLK-KTPEIFDIPIGGS 160
Query: 599 TIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTHKGL 778
+ K+++A L K + ++ VF + + +D I R+H + K+ KG+
Sbjct: 161 DVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGV 220
Query: 779 RKVACIGAWHPSRV 820
RKV IG+ P R+
Sbjct: 221 RKVGAIGSRGPGRI 234
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 90.2 bits (214), Expect = 6e-17
Identities = 79/289 (27%), Positives = 129/289 (44%), Gaps = 43/289 (14%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 175
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 176 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 352
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
Query: 353 ---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRKSIEKD 481
E + E + + N + E G K +E +
Sbjct: 125 RSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFKFLENN 184
Query: 482 FKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKP 646
+K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A + L
Sbjct: 185 WKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNY 244
Query: 647 IPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLP--GKTHKGLRKV 787
+ VD VF + + ID I R+ K+LP K KG RK+
Sbjct: 245 VTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRKI 293
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 88.2 bits (209), Expect = 2e-16
Identities = 69/254 (27%), Positives = 115/254 (45%), Gaps = 7/254 (2%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 239 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRRFYK-NWYX 406
KEI VT++E PP++ + + Y G ++T W+ + D RR + + +
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSISSFL 127
Query: 407 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA-HIMEI 583
+ +L I+ + +++ + R++ TQ + + KKA ++EI
Sbjct: 128 KDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGKKAPDLVEI 181
Query: 584 QLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLP-- 757
Q+ GG + ++ +A L K I + VF + ++ID + R+ +LP
Sbjct: 182 QIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRW 241
Query: 758 GKTHKGLRKVACIG 799
K KG RK+ G
Sbjct: 242 HKHRKGSRKIGTRG 255
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 85.8 bits (203), Expect = 1e-15
Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 1/263 (0%)
Frame = +2
Query: 56 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 235
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 236 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 415
+ I VT+IE PP+ +G+ Y E G + V E +++ + +K
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEG---NMVVVYEKWTQNLDKELFKK------ 114
Query: 416 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 595
E+ K + + Y V ++A + KK I E+++ G
Sbjct: 115 -------ITTFKEVKEKPVPE------TYADVRLIVATRNKDVPGIPSKKPEIFELRIGG 161
Query: 596 G-TIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTHK 772
G +++++ ++A HL K I + + +D + R+ K LP K K
Sbjct: 162 GNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRK 221
Query: 773 GLRKVACIGAWHPSRVSSLVXRA 841
R + +G WHP V + V +A
Sbjct: 222 HRRMIGTLGPWHPDWVRNTVPQA 244
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 84.6 bits (200), Expect = 3e-15
Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 13/256 (5%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 238
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 239 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW-------AEHMSEDCRRRFY 391
+EI VT+IETPPMV +G V GY + G AL VW E + E+ R++
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVWRNPSDTIKEKLGEEVLRKYL 124
Query: 392 --KNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKK 565
+ ++ ++ K ++ D +K++ ++ I + K K
Sbjct: 125 LGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVVGVGLIMSSIPFLAGGVSK---KA 181
Query: 566 AHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHT 745
I+E+++ G +E +++A+ L + + V+ V + +D I R+
Sbjct: 182 PDILEVKVGGSPVE-ALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGV 240
Query: 746 KKLP--GKTHKGLRKV 787
K+LP K KG R+V
Sbjct: 241 KELPKWHKHRKGSRRV 256
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 83.8 bits (198), Expect = 5e-15
Identities = 67/260 (25%), Positives = 116/260 (44%), Gaps = 6/260 (2%)
Frame = +2
Query: 59 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 232
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 233 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYXX 409
EI VTI+E P M G+ Y ++P+G + + W + + KN Y
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYK- 121
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
DE K E K ++ V+ V +++ + +K +ME ++
Sbjct: 122 ------------TDEQLAKIAELVKKGVVADLRVMTVTLTSEVSGIP--KKVPELMENRI 167
Query: 590 NGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRW---HTKKLPG 760
GG + + ++A+ + K + + VF E++D RW K+
Sbjct: 168 AGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHA 227
Query: 761 KTHKGLRKVACIGAWHPSRV 820
+T K R V +G W+P R+
Sbjct: 228 RTGK-KRHVGNLGPWNPHRI 246
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 77.4 bits (182), Expect = 4e-13
Identities = 41/117 (35%), Positives = 67/117 (57%)
Frame = +2
Query: 491 MIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFX 670
+I++ + R + T +K +KK + E + GG+ + K+++ + K I ++S+F
Sbjct: 136 IIKHSVIFRFLCCTFIKTNSMIKKK-YFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFH 194
Query: 671 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTHKGLRKVACIGAWHPSRVSSLVXRA 841
++++ID I SRW +LP KTH+GLRKVACIG W PSRV+ + RA
Sbjct: 195 ENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTISRA 251
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 349
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 68.1 bits (159), Expect = 3e-10
Identities = 58/264 (21%), Positives = 110/264 (41%)
Frame = +2
Query: 50 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 229
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 230 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 409
K++V T++ TPP+ +G+ GY + +G V+AE + + + Y
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPREVAK------YIV 117
Query: 410 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 589
GR + E+ + M+ + + I + QK+ +I E +
Sbjct: 118 LRN-------------GRLNAER-AETMLGGTAEIYGILGVSPRSAGLEQKRPYIFEAPV 163
Query: 590 NGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPGKTH 769
GG+++++ + ++ L K + V +D R K+ K+
Sbjct: 164 RGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRMGAKRKQHKSR 223
Query: 770 KGLRKVACIGAWHPSRVSSLVXRA 841
K +R++ +G P V V RA
Sbjct: 224 KTVRELGSLGPISPQNVMYTVPRA 247
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.078
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 107 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 244
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 37.1 bits (82), Expect = 0.55
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +2
Query: 455 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 634
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 635 LEKPIPVDSVFXQDEMI 685
EKPI ++ + ++ I
Sbjct: 195 KEKPISLEEILDPEDRI 211
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 241 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 345
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 34.7 bits (76), Expect = 2.9
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 506 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVKWAREHLEKPI 649
SV + I + Q LL QR +K H +M + L GG+IED + RE+L P+
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPL 174
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 3.9
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 92 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 265
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 266 IIETPPMVCVGVVG 307
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 5.1
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 419 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 270
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 443 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 598
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 310
Score = 33.5 bits (73), Expect = 6.8
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 10 FSLRLSSSMSHRKFSAPRSWVYGILSQKE 96
FSL L+ S S+R+F P+SWV+G+ + ++
Sbjct: 165 FSLGLNLSTSNRQFVPPKSWVFGMAAMRK 193
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 33.5 bits (73), Expect = 6.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 660 ESTGIGFSRCSLAHFTLSSMVPPLSWISIM*AFFCRCFNSFI 535
E TG+ S+C +H +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.0
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 286 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 137
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 855,367,245
Number of Sequences: 1657284
Number of extensions: 17476331
Number of successful extensions: 41563
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 39937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41527
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73783549980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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