Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K24
         (953 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    28   0.12 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    28   0.12 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    28   0.12 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.38 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    26   0.38 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   1.1  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWK 87


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWK 87


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 0.12
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
           ++ E    +   A L + W D  L WN  E+ G     ++  +LW+
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWK 87


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 261 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
           L + W D  L WN  E+ G     ++  +LW+
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWK 87


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 261 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
           L + W D  L WN  E+ G     ++  +LW+
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWK 87


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -2

Query: 163 SRSYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTT 23
           ++  V+    + +DS  AF+      +AQV    N  N + R   TT
Sbjct: 82  AQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTNNGTNKNMRRLSTT 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,957
Number of Sequences: 336
Number of extensions: 1871
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26892580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)