Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K24
         (953 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    33   0.33 
12_01_0524 - 4167867-4168445                                           31   1.4  
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44...    30   2.4  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           29   4.1  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    28   9.5  
02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942     28   9.5  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.1 bits (72), Expect = 0.33
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 332 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGXGLTNVSMSQM-QGQVXYDFGVGG 168
           H P AAA  P VP++    P  L +   S GG GL   S S +  G    D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = -1

Query: 362 RAGLPQAFRGH---QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGXGLTNVSMSQMQGQV 192
           +A    A  GH   QPS+AA  P   + +    +   +  YSH G    +   S + G+ 
Sbjct: 90  KANAAAAAAGHVERQPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLGEK 149

Query: 191 XYDFGVGGGVPIVRCEERVDHEGQ*C 114
               G GGG P V  EE  + E + C
Sbjct: 150 A--AGAGGGEPAV-VEEVEEEEEKEC 172


>03_01_0051 +
           445035-445303,445380-445590,445737-445930,446151-446228,
           447049-447141,448495-448525,448729-449058
          Length = 401

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 366 STCRPPTSVPRTPAKCCSPTPLRSNSVVCRSNSFE 262
           S CR PT   R PA  C P P +   V CR   F+
Sbjct: 327 SCCRTPTPGIREPA-TCPPAPRKPRPVACRKLLFD 360


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 368 SPRAGLPQAFRGHQPSAAAPLPCVPT 291
           SP A +P A   H P+  AP P VPT
Sbjct: 282 SPPAPMPSALATHVPTPPAPAPPVPT 307


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 230 VRXHRANTGRSSNELDRQTTELERRG 307
           V+ H     R S EL+RQ  ELER+G
Sbjct: 89  VQRHGEELERQSRELERQREELERQG 114


>02_03_0361 - 18125504-18126250,18126381-18126543,18126713-18126942
          Length = 379

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 304 GSGAAALGWCPRNACGRP 357
           G+GAAAL  C +  CGRP
Sbjct: 295 GAGAAALRMCSQPTCGRP 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,411
Number of Sequences: 37544
Number of extensions: 254386
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)