Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K24
         (953 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)         32   0.79 
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)           32   0.79 
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               29   4.2  
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)         28   9.7  

>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
          Length = 373

 Score = 31.9 bits (69), Expect = 0.79
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +3

Query: 141 LLATYDRDSPP----DSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLSWNAG 305
           L  TY++D  P    D  +   L L L    ++ +   T+ +   ++  W D RL WN  
Sbjct: 20  LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79

Query: 306 EW-GCSTWLVSSERLW 350
            + G    ++ + RLW
Sbjct: 80  AYDGVDNIVIKASRLW 95


>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
          Length = 478

 Score = 31.9 bits (69), Expect = 0.79
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 267 MNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
           + W++  LSWNA E+ G +T  V  +RLW
Sbjct: 77  VKWVNPSLSWNASEFGGVNTLHVEPDRLW 105


>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 541

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 129 MIDSLLATYDRDSPP----DSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLS 293
           ++  LL  Y +D+ P    +  +   L + LR   ++ E    + I   ++  W D  L 
Sbjct: 35  LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94

Query: 294 WNAGEW-GCSTWLVSSERLWE 353
           WN  ++ G  +  ++ +R+W+
Sbjct: 95  WNPDDFGGIKSINIAPDRVWK 115


>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
          Length = 445

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 261 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
           + + W +  LSWNA E+ G S   VS +R W
Sbjct: 21  IAVRWTNPDLSWNASEYGGVSQIYVSPKRPW 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,437,945
Number of Sequences: 59808
Number of extensions: 255466
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)