Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_K24
(953 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for ... 31 4.7
X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor pr... 31 4.7
S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine r... 31 4.7
BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein. 31 4.7
AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein. 31 4.7
Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine r... 31 6.2
U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine r... 31 6.2
U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic acetylch... 31 6.2
BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein. 31 6.2
BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor, n... 31 6.2
BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein. 31 6.2
BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor, n... 31 6.2
AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic acet... 31 6.2
AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic acet... 31 6.2
>Y00762-1|CAA68731.1| 457|Homo sapiens protein ( Human mRNA for
muscle acetylcholine receptor alpha-subunit. ).
Length = 457
Score = 31.5 bits (68), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
N+ E V L+ W+D L WN ++G + + SE++W
Sbjct: 62 NVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIW 106
>X02502-1|CAA26344.1| 457|Homo sapiens acetylcholine receptor
protein.
Length = 457
Score = 31.5 bits (68), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
N+ E V L+ W+D L WN ++G + + SE++W
Sbjct: 62 NVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIW 106
>S77094-1|AAD14247.1| 457|Homo sapiens nicotinic acetylcholine
receptor alpha subunit|AChR protein.
Length = 457
Score = 31.5 bits (68), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
N+ E V L+ W+D L WN ++G + + SE++W
Sbjct: 62 NVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIW 106
>BC006314-1|AAH06314.1| 269|Homo sapiens CHRNA1 protein protein.
Length = 269
Score = 31.5 bits (68), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
N+ E V L+ W+D L WN ++G + + SE++W
Sbjct: 62 NVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIW 106
>AC018890-1|AAY14687.1| 457|Homo sapiens unknown protein.
Length = 457
Score = 31.5 bits (68), Expect = 4.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
N+ E V L+ W+D L WN ++G + + SE++W
Sbjct: 62 NVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIW 106
>Y08416-1|CAA69693.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>U62439-1|AAB40117.1| 498|Homo sapiens nicotinic acetylcholine
receptor beta4 subunit precursor protein.
Length = 498
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>U48861-1|AAA92123.1| 498|Homo sapiens beta 4 nicotinic
acetylcholine receptor subunit protein.
Length = 498
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>BC096083-1|AAH96083.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>BC096082-1|AAH96082.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>BC096081-1|AAH96081.1| 198|Homo sapiens CHRNB4 protein protein.
Length = 198
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>BC096080-1|AAH96080.1| 498|Homo sapiens cholinergic receptor,
nicotinic, beta 4 protein.
Length = 498
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>AJ306454-1|CAC34819.1| 497|Homo sapiens neuronal nicotinic
acetylcholine receptor beta-4 subunit protein.
Length = 497
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
>AF306329-1|AAL02062.1| 498|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 4 subunit protein.
Length = 498
Score = 31.1 bits (67), Expect = 6.2
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLL--ATYD---RDSPPDSKIVX---NLTL-HLRHANIRES 233
A+ C A + ++D LL Y+ R + S+++ L+L L N RE
Sbjct: 14 ALCGRGNCRVANAEEKLMDDLLNKTRYNNLIRPATSSSQLISIKLQLSLAQLISVNEREQ 73
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + L+ W D RL+WN+ + G + + ++R+W
Sbjct: 74 IMTTNVW--LKQEWTDYRLTWNSSRYEGVNILRIPAKRIW 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,727,852
Number of Sequences: 237096
Number of extensions: 1266713
Number of successful extensions: 4001
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4001
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12603135794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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