Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_K24
(953 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 38 0.008
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 37 0.018
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 37 0.018
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 37 0.024
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 37 0.024
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 37 0.024
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 37 0.024
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 37 0.024
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 37 0.024
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 36 0.032
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 36 0.043
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 35 0.099
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 34 0.13
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 34 0.17
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 34 0.17
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 34 0.17
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 34 0.17
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.23
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.23
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.23
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 33 0.23
AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical ... 33 0.23
AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical ... 33 0.23
AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.40
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 31 0.92
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 31 0.92
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 31 1.2
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 31 1.2
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 31 1.2
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 31 1.2
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 30 2.8
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 29 3.7
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 29 3.7
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 29 3.7
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 29 3.7
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 29 4.9
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 29 4.9
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 29 4.9
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 29 6.5
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 29 6.5
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 28 8.6
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 28 8.6
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 153 YDRDSPPDSKIVXNLTLHLRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL- 329
YD ++P L +L+ ++E + + ++ W D RLSWNA W +T +
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNASAWQNTTMIY 122
Query: 330 VSSERLW 350
+ +++W
Sbjct: 123 MKQDKVW 129
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 37.1 bits (82), Expect = 0.018
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +3
Query: 120 LSLMIDSLLATYDRDSPPDSKIVXNLTLHL-----RHANIRESXSTVRIQADLQMNWIDK 284
+S ++++LL Y++ P L + R ++ E + L+M W DK
Sbjct: 29 VSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Query: 285 RLSWNAGEWGCSTWL-VSSERLW 350
+L+WN +WG ++ + S+++W
Sbjct: 89 KLTWNPTDWGGVEYIHIPSDQIW 111
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 37.1 bits (82), Expect = 0.018
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = +3
Query: 90 SAAECENATSLSLMIDSLLATYDRDSPPDSKIVXNLTLHLRHANIRESXSTVRIQADLQM 269
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 270 NWIDKRLSWNAGEWGCSTWL 329
+W D +SW+ +WG S WL
Sbjct: 114 SWNDTMVSWDKEQWGLS-WL 132
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + L L H I E T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CSTWLVSSERLW 350
+G TW + +++W
Sbjct: 130 LFGGITKTW-IPLDKIW 145
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + L L H I E T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CSTWLVSSERLW 350
+G TW + +++W
Sbjct: 130 LFGGITKTW-IPLDKIW 145
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + L L H I E T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CSTWLVSSERLW 350
+G TW + +++W
Sbjct: 130 LFGGITKTW-IPLDKIW 145
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + L L H I E T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CSTWLVSSERLW 350
+G TW + +++W
Sbjct: 130 LFGGITKTW-IPLDKIW 145
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + L L H I E T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CSTWLVSSERLW 350
+G TW + +++W
Sbjct: 130 LFGGITKTW-IPLDKIW 145
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 36.7 bits (81), Expect = 0.024
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLSWNAG 305
+ + LL+ ++ ++PPD + L L H I E T+ + + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 306 EWG--CSTWLVSSERLW 350
+G TW + +++W
Sbjct: 130 LFGGITKTW-IPLDKIW 145
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 36.3 bits (80), Expect = 0.032
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVXNLTLHLRHA-NIRESXSTVRI 251
T +A +E +S S + LL +++ SPPD ++ + + L H I E +++
Sbjct: 56 TVGVAEFSEQYQGSS-SRLTRHLLEKHNKCSPPDGRVDISHNIELVHIIGINELNQNMQV 114
Query: 252 QADLQMNWIDKRLSWNAGEW-GCS-TWL 329
+ W D LSW E+ G TWL
Sbjct: 115 LVYIVQQWTDASLSWKVEEFRGIKHTWL 142
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 35.9 bits (79), Expect = 0.043
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 153 YDRDSPPDSKIVXNLTLHLRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWLV 332
YD D+P L +L+ + E V + +L W D RLSWNA ++ T +
Sbjct: 65 YDPDAPQRYNYTLFL-YNLKLIQVNEPEEQVSVVLELMEYWYDPRLSWNASDYKNVTAIF 123
Query: 333 S-SERLW 350
+ E++W
Sbjct: 124 TRQEKIW 130
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 34.7 bits (76), Expect = 0.099
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 207 LRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSS-ERLW 350
L+H + E + I L+++W D RL WN W + +V S +W
Sbjct: 69 LQHFELNEHLKDISIHGYLELSWHDDRLMWNQDTWKKNKLVVHSFHHIW 117
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 34.3 bits (75), Expect = 0.13
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
++ E + ++ L +W+D RLSWN E+G T + E LW
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPGEMLW 88
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 195 LTLHLRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
L +L+ ++E V + +L W D RLSWN+ + T V E++W
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNSSLYSNIPTVFVRQEKVW 131
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLW 350
N+ E ++ L M W D +L+WN E+G S V S+R+W
Sbjct: 99 NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRVW 143
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLW 350
N+ E ++ L M W D +L+WN E+G S V S+R+W
Sbjct: 99 NVDEKNQILQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRVW 143
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 33.9 bits (74), Expect = 0.17
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 201 LHLRHAN-IRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWEACTW 365
LH+ H + I++ +++ W+D+RL WN + G T+ + +W W
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWNPSNYSGIRTFSTTRHEMWRKKFW 118
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 195 LTLHLRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
L +L+ ++E V + +L W D RLSWN + ST E++W
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWNISLYSNVSTIFARQEKVW 131
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.23
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +3
Query: 129 MIDSLLATYDR----DSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLS 293
+ D L+ Y+R + P+ + L L L ++ E + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 294 WNAGEW-GCSTWLVSSERLW 350
W+ + G + V E +W
Sbjct: 90 WDPVNYGGVNVLYVPYEMIW 109
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.23
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +3
Query: 129 MIDSLLATYDR----DSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLS 293
+ D L+ Y+R + P+ + L L L ++ E + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 294 WNAGEW-GCSTWLVSSERLW 350
W+ + G + V E +W
Sbjct: 90 WDPVNYGGVNVLYVPYEMIW 109
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.23
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = +3
Query: 129 MIDSLLATYDR----DSPPDSKIVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLS 293
+ D L+ Y+R + P+ + L L L ++ E + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 294 WNAGEW-GCSTWLVSSERLW 350
W+ + G + V E +W
Sbjct: 90 WDPVNYGGVNVLYVPYEMIW 109
>AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical
protein Y74E4A.1a protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 222 IRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTW-LVSSERLW 350
+ E + I L+++W D+RL WN EW L S RLW
Sbjct: 94 MNEVFKEMNINGFLKLSWKDRRLRWNPEEWKTEVLRLKSMGRLW 137
>AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical
protein Y74E4A.1b protein.
Length = 428
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 222 IRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTW-LVSSERLW 350
+ E + I L+++W D+RL WN EW L S RLW
Sbjct: 94 MNEVFKEMNINGFLKLSWKDRRLRWNPEEWKTEVLRLKSMGRLW 137
>AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical
protein Y58G8A.1 protein.
Length = 486
Score = 32.7 bits (71), Expect = 0.40
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 201 LHLRHAN-IRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWE 353
L++ H + E T + L +W D+ L W ST ++S +LW+
Sbjct: 58 LNIAHVEKVDEHEQTALVHGHLMASWTDEYLKWERKATNISTLSIASSKLWQ 109
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 207 LRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
+R ++ E + L+M W D RL W+ G WG L V +++W
Sbjct: 59 IRIIDVDEVNQVLTTNLWLEMQWFDYRLMWDPGRWGKIRKLHVPVDQIW 107
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 192 NLTLHLRHAN-IRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWE 353
N+ L + H + E T + + WID+ + W+A + + +S+ LW+
Sbjct: 55 NVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDAKKENVTKLTISAHSLWQ 109
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 31.5 bits (68), Expect = 0.92
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 261 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWE 353
L +NW+D RLSWN W + R+W+
Sbjct: 165 LNINWMDPRLSWNESLWSEIKAIYIPHARIWK 196
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVXNLTLHLRHA-----NIRESXS 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWG 314
V + A L W D L W+ E+G
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYG 92
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVXNLTLHLRHA-----NIRESXS 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWG 314
V + A L W D L W+ E+G
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVXNLTLHLRHA-----NIRESXS 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWG 314
V + A L W D L W+ E+G
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVXNLTLHLRHA-----NIRESXS 239
+CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 9 SCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEKNQ 67
Query: 240 TVRIQADLQMNWIDKRLSWNAGEWG 314
V + A L W D L W+ E+G
Sbjct: 68 VVYVNAWLDYTWNDYNLVWDKAEYG 92
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 153 YDRDSPPDSKIVXNLTLH-LRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTW 326
YD D+P + ++ L+ L+ + E V + ++ W D RLSWNA + T+
Sbjct: 64 YDPDAP--KRYNYSIMLYSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNASLYDDIDTF 121
Query: 327 LVSSERLW 350
+W
Sbjct: 122 YTRQSNVW 129
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Frame = +3
Query: 99 ECENATSLSLMIDSLLATYDRDSPPDSK----IVXNLTLHLRHA-NIRESXSTVRIQADL 263
E + T + D L+ YD P + ++ N++++ + + T+ ++
Sbjct: 21 EVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTLDPAEETINFSSEF 80
Query: 264 QMNWIDKRLSWNAGEWGCSTWLVSSER-LW 350
+ W D+ L WN ++ TWL E LW
Sbjct: 81 ILQWKDEFLFWNKSDYNI-TWLKLKESFLW 109
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSK----IVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLS 293
+ + L+A Y++ P S+ +V L L ++ E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 294 WNAGEW-GCSTWLVSSERLW 350
W+ E+ G V S+ +W
Sbjct: 90 WDPVEYGGVEVLYVPSDTIW 109
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 168 PPDSKIVXNLTLHLRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSERL 347
PP +++ + + L+ ++ E V D W D+RL WN E+G + + +R+
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYGGISHIYVPQRM 109
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Frame = +3
Query: 93 AAECENATSL----SLMIDSLLATYDRDSPP--DSKIVXNLTLHLRHA-NIRESXSTVRI 251
A CEN +L S +++ + YDR P ++ N+T+ L ++E+
Sbjct: 57 ALNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAY 116
Query: 252 QADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
W D RLSW+ ++ G +V +W
Sbjct: 117 VISHTQRWYDGRLSWDPSKYRGQREVIVPQTMVW 150
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSK----IVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLS 293
+ + L+A Y++ P S+ +V L L ++ E + LQ +W+D +L
Sbjct: 30 LFEDLIADYNKLVRPVSENGETLVVTFKLKLSQLLDVHEKNQIMTTNVWLQHSWMDYKLR 89
Query: 294 WNAGEW-GCSTWLVSSERLW 350
W+ E+ G V S+ +W
Sbjct: 90 WDPVEYGGVEVLYVPSDTIW 109
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 204 HLRHANIRESXSTVRIQADLQMNWIDKRLSWN 299
H+ H +I + T+ + + M W D+ L W+
Sbjct: 80 HIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 204 HLRHANIRESXSTVRIQADLQMNWIDKRLSWN 299
H+ H +I + T+ + + M W D+ L W+
Sbjct: 80 HIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSK--IVXNLTLHLRHA-NIRESXSTVRIQADLQMNWIDKRLS 293
+I+ L++ Y R+ P DS +V +L + L+ N+ E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 294 W 296
W
Sbjct: 85 W 85
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = +3
Query: 84 IASAAECENATSLSLMIDSLLATYDRD-SPPDSKIVXNLTLH-LRHANIRESXSTVRIQA 257
+ + A E + + +L+ TYD D P D + +T + ++ ++ T++
Sbjct: 17 LTAVAFLETSNTETLLQQLFNQTYDVDMKPSDDLTMVTITPNTFILLSMDQTQETIQYSE 76
Query: 258 DLQMNWIDKRLSWNAGEWGC-STWL-VSSERLW 350
+ + W D L WN + W+ +S+ R W
Sbjct: 77 EFLLRWYDPILHWNQSAVSYENDWIKISASRAW 109
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 168 PPDSKIVXNLTLHLRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEWG 314
PP +I L++ ++ + E D + +W D RLSW+ ++G
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 222 IRESXSTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWE 353
+ E V I L++ WID+ L+W+ ++G S V + ++W+
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWK 113
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 222 IRESXSTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWE 353
+ E V I L++ WID+ L+W+ ++G S V + ++W+
Sbjct: 69 VDERDQIVNIYCWLELYWIDETLTWDPKKFGNLSRIHVPAHKIWK 113
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,105,012
Number of Sequences: 27780
Number of extensions: 187373
Number of successful extensions: 705
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2475644248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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