Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_K24
(953 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 39 6e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 37 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 0.001
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 32 0.007
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 31 0.012
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.020
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.020
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.020
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.020
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.020
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.020
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.020
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.020
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 31 0.020
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 30 0.036
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 27 0.19
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 25 0.76
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.76
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.76
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 0.76
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 1.3
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 3.1
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.4
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 39.1 bits (87), Expect = 6e-05
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 102 CENATSLSLMIDS---LLATYDRDSPPDSKIVXNLT--LHLRHANIRESXSTVRIQADLQ 266
C++ TS S + L YDRD P+ K + L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 267 MNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
+ W L+W + E+ ++ V S +W
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIW 116
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 36.7 bits (81), Expect = 3e-04
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Frame = +3
Query: 84 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVXNLTLHLRHA---NIRESXST 242
I SA C + D LL+ Y+R P S +V L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 243 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
+ L+ W D + W+ E+G T L V SE +W
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 35.1 bits (77), Expect = 0.001
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +3
Query: 108 NATSLSLMIDSLLATYDRDSPPD---SKIVXNLTLHLRHAN-IRESXSTVRIQADLQMNW 275
N +++S ++D+LL YD PD + + +R I E T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 276 IDKRLSWNAGEWGCSTWLVSSERLWEACTW 365
+D+RL++ G+ + + R+W+ T+
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTY 91
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 32.3 bits (70), Expect = 0.007
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Frame = +3
Query: 75 TCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVXNLTL-------HLRHANIRES 233
+C +A + + D LL+ Y+R P LT+ L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 234 XSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLW 350
T + ++ W D +L WN ++ G T V SE +W
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIW 103
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 31.5 bits (68), Expect = 0.012
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Frame = +3
Query: 129 MIDSLLATYDRDSPPDSKIVXNLTLHLR-------HANIRESXSTVRIQADLQMNWIDKR 287
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 288 LSWNAGEWGCSTWL-VSSERLW 350
L WN E+G L V SE +W
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIW 116
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 70
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 138
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.020
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWE 353
++ E + A L++ W+D L WN E+ G ++ +LW+
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWK 138
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 30.7 bits (66), Expect = 0.020
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Frame = +3
Query: 102 CENATSLSLMIDSLLATYDRDSPPDSKIVXNLTLHLR-------HANIRESXSTVRIQAD 260
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 261 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 350
++ +W D +L W+ E+G L V S+ +W
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIW 107
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 29.9 bits (64), Expect = 0.036
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +3
Query: 105 ENATSLSLMIDSLLATYDRDSPPDS--KIVXNLTLHL--RHANIRESXSTVRIQADLQMN 272
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 273 WIDKRLSWNAGEW-GCSTWLVSSERLW 350
W D LSW ++ G + V S+ +W
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIW 125
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 27.5 bits (58), Expect = 0.19
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +3
Query: 183 IVXNLTLHLRHANIRESXSTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWEAC 359
+V L+LH ++ E + + W D L WNA E+ G V R+W
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 360 T 362
T
Sbjct: 92 T 92
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 25.4 bits (53), Expect = 0.76
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP------DSKIVXNLTLHLRH-ANIRESXSTVRIQADLQMNWIDKR 287
++D++L YD P D + + L +R A I + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 288 LSWN--AGEWGCSTWLVSSERLW 350
L +N G T L + R+W
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVW 116
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.76
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSKIVXNLTLHLR-----HANIRESXSTVRIQADLQMNWIDKR 287
+ D LL+ Y++ P ++ V + + L+ N++ T + ++ +W D +
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYK 89
Query: 288 LSWNAGEWGCSTWL-VSSERLW 350
L W E+G L V S+ +W
Sbjct: 90 LRWEPKEYGGVKMLHVPSDHIW 111
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 25.4 bits (53), Expect = 0.76
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = +3
Query: 129 MIDSLLATYDRDSPP--DSKIVXNLTLHLR-----HANIRESXSTVRIQADLQMNWIDKR 287
+ D LL+ Y++ P ++ V + + L+ N++ T + ++ +W D +
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYK 89
Query: 288 LSWNAGEWGCSTWL-VSSERLW 350
L W E+G L V S+ +W
Sbjct: 90 LRWEPKEYGGVKMLHVPSDHIW 111
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 25.4 bits (53), Expect = 0.76
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Frame = +3
Query: 81 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVXNLTLHLRHA-NIRESXSTV 245
A+A++ + +++ LL TY+ P +V + L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 246 RIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWE 353
L++ W D + WN ++G L + RLW+
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWK 107
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.6 bits (51), Expect = 1.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = +3
Query: 219 NIRESXSTVRIQADLQMNWIDKRLSWNAGEWG 314
N+ E ++ L+ W D +L W+ ++G
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 23.4 bits (48), Expect = 3.1
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +3
Query: 117 SLSLMIDSLLATYDRDSPPD----SKIVXNLTLHLRHAN-IRESXSTVRIQADLQMNWID 281
++++++++LL Y+ + P + V + +R + E + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 282 KRLSWNAGEWGCSTWLVSSERLWEACTW 365
RLS+ S + ER+W T+
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTY 123
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 326 PSAAAPLPCVPTQS 285
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,076
Number of Sequences: 438
Number of extensions: 2128
Number of successful extensions: 36
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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