Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K23
         (889 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   299   2e-81
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   290   9e-79
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   290   9e-79
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    31   1.0  
At1g29195.1 68414.m03572 expressed protein                             30   1.8  
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    29   4.1  
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ...    29   5.4  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  299 bits (733), Expect = 2e-81
 Identities = 140/246 (56%), Positives = 180/246 (73%), Gaps = 2/246 (0%)
 Frame = +3

Query: 42  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 221
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGS 65

Query: 222 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 401
           K++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKS 125

Query: 402 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 578
                       + E G+K I+   +KM +YCSV+RV+AHTQ++ +K  +QKKAH+ EIQ
Sbjct: 126 KKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQ 185

Query: 579 LNGGTIEDKVKWARXHLEKPIPVDSVFAQDEMIDCIGVPRAKDTK-VSLLVGXKXXTP*T 755
           +NGG I  KV +A    EK +PVD++F +DEMID IGV + K  + V    G       T
Sbjct: 186 INGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245

Query: 756 HKGLXK 773
           H+GL K
Sbjct: 246 HRGLRK 251


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  290 bits (711), Expect = 9e-79
 Identities = 138/246 (56%), Positives = 177/246 (71%), Gaps = 2/246 (0%)
 Frame = +3

Query: 42  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 221
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 222 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 401
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKS 125

Query: 402 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 578
                      +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQ 185

Query: 579 LNGGTIEDKVKWARXHLEKPIPVDSVFAQDEMIDCIGVPRAKDTK-VSLLVGXKXXTP*T 755
           +NGGTI  KV +A    EK IP+++VF +DEMID IGV + K  + V    G       T
Sbjct: 186 INGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245

Query: 756 HKGLXK 773
           H+GL K
Sbjct: 246 HRGLRK 251


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  290 bits (711), Expect = 9e-79
 Identities = 138/246 (56%), Positives = 177/246 (71%), Gaps = 2/246 (0%)
 Frame = +3

Query: 42  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 221
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 222 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 401
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKS 125

Query: 402 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 578
                      +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQ 185

Query: 579 LNGGTIEDKVKWARXHLEKPIPVDSVFAQDEMIDCIGVPRAKDTK-VSLLVGXKXXTP*T 755
           +NGGTI  KV +A    EK IP+++VF +DEMID IGV + K  + V    G       T
Sbjct: 186 INGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245

Query: 756 HKGLXK 773
           H+GL K
Sbjct: 246 HRGLRK 251


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -3

Query: 386 FVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 207
           F   T T  R+   P     A ++    ++N + T+ +  L  G++L+ LFL+ F     
Sbjct: 46  FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103

Query: 206 RFSNHVGHTGLITD 165
             + H G+  ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 153 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 275
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -3

Query: 707 ILCPGDTNAVNH----FILGKHRIDRDRFLQMXSGPFHFVLDGTT 585
           ++  GDT+ V        L KH + +D+ L++  G +H +L+G T
Sbjct: 316 LILHGDTDKVTDPTVSKFLHKHAVSQDKTLKLYPGGYHCILEGDT 360


>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 253

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 524 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQXTSGETYPCRFC 655
           S +  K A +EGS  G        +G  E G+  SG+ Y CRFC
Sbjct: 18  SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,249,610
Number of Sequences: 28952
Number of extensions: 390401
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)