Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K22
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.30 
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.30 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.9  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    26   8.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 719  PAXNLSXXXLPPPPXXXXXRPXPXPPXRPPLPXXNSXXSCXXPPPTP 859
            P   L     PP P      P P P   PP+P  +S  +   PPP P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP-KSSSGAPSAPPPVP 1067


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 259 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 360
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
 Frame = +2

Query: 779 PXPXPPXR-----PPLPXXNSXXSCXXPPPTPXXN 868
           P P PP R     PP+   +S  S   PPP P  N
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSN 346



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
 Frame = +2

Query: 728 NLSXXXLPPPPXXXXXRPXPXPP---XRPPLPXXNSXXSCXXPPP 853
           N S    PPPP        P PP     PP P   S  S    PP
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +2

Query: 722 AXNLSXXXLPPPPXXXXXRPXPXPPXRPPLPXXNSXXSCXXPPPTP 859
           A   S   +P PP      P   PP  PP     +  +   PP  P
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 749 PPPPXXXXXRPXPXPPXRPPLPXXNSXXSCXXPPPTP 859
           PPPP      P P P   P  P          PPP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +2

Query: 749 PPPPXXXXXRPXPXPPXRPPLPXXNSXXSCXXPPPTP 859
           PPPP      P P PP  P +    S      P   P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 337 FPCVPTQSFVDPIHLKICQYPHGGL 263
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 746 LPPPPXXXXXRPXPXPPXRPPLPXXNSXXSCXXPPPTP 859
           +P PP        P  P RP +P      S   PP  P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAP 641



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 746 LPPPPXXXXXRPXPXPPXRPPLPXXNSXXSCXXPPPTP 859
           +P PP        P  P RP +P      S   PP  P
Sbjct: 634 VPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAP 671


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 75  YIILVTCFSSLVL*LVRQNAKTQHHCP 155
           YI+L TC +  +L  +     T  HCP
Sbjct: 4   YIVLYTCLAGFILLFLVYYYLTHSHCP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,619
Number of Sequences: 5004
Number of extensions: 54096
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)