Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K18
         (930 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    43   4e-06
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    43   4e-06
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    40   2e-05
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    39   6e-05
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    39   6e-05
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.84 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    24   1.5  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +2

Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
            +LW+PDV++ N+A     G +     V +NGS
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +2

Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
            +LW+PDV++ N+A     G +     V +NGS
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGS 115


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +2

Query: 173 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 350 ERLWRPDVVLLNAA 391
            +LW+PDV++ N+A
Sbjct: 83  NKLWKPDVLMYNSA 96


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -1

Query: 252 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 73
           V S+S       CR     I +    ++  V+    + +DS  AF+      +AQV    
Sbjct: 56  VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115

Query: 72  NKNNISRRHFMTT 34
           N  N + R   TT
Sbjct: 116 NGTNKNMRRLSTT 128


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 472 MSKRFITGDGAVIRYTGAESVVPGGGC 392
           MS  ++  DG+VI     E VV G GC
Sbjct: 345 MSMLYLGSDGSVILKNYKEMVVVGCGC 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,488
Number of Sequences: 336
Number of extensions: 2848
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)