Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K17
         (902 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    93   2e-21
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   4.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   4.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   10.0 

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 93.5 bits (222), Expect = 2e-21
 Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 9/215 (4%)
 Frame = +1

Query: 28  EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXX 207
           + PPP     SF    L   L++ +    +  PT IQ   IP+ L G+D+          
Sbjct: 152 DAPPPI---TSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGK 208

Query: 208 XXXYMLPILERLLYKAKGGDRITR-----VLVLVPTRELGAQVHAVTRQLAQFXXXXXXX 372
              +MLPI+  LL      +         V+++ PTREL  Q+    ++ A         
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAV 268

Query: 373 XXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFA 552
                   +Q   +     I++ATPGRL D + N  +   +S++  VLDEADRMLD  F 
Sbjct: 269 IYGGTSTNHQRGRILGGCHILVATPGRLKDFV-NRGNVSFNSLKYFVLDEADRMLDMGFL 327

Query: 553 EQMKEII-RQCSP---KRQTMLFSATMSEEVKDLA 645
             ++E++  Q  P   +RQT++FSAT  EEV+ LA
Sbjct: 328 GDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLA 362


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 426 RHSDSDAGSAHRSHTEHTLVRAPQHRGSG 512
           RH  S  G +H     H ++    H G G
Sbjct: 353 RHQISSMGHSHAHPMHHDMLPETMHMGMG 381


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 426 RHSDSDAGSAHRSHTEHTLVRAPQHRGSG 512
           RH  S  G +H     H ++    H G G
Sbjct: 353 RHQISSMGHSHAHPMHHDMLPETMHMGMG 381


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 612 REQHGLTFRGTLTDDLLHLLREVF 541
           R+ + L   G   +DLLH  R ++
Sbjct: 424 RDSYNLAGMGETIEDLLHFCRTMY 447


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,259
Number of Sequences: 336
Number of extensions: 4549
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)