Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_K17
(902 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 211 9e-56
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 132 9e-32
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 129 5e-31
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 116 3e-27
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 112 6e-26
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 112 7e-26
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 109 7e-25
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 106 5e-24
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 99 4e-22
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 95 2e-20
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 91 1e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 89 8e-19
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 88 2e-18
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 88 2e-18
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 88 2e-18
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 87 4e-18
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 85 1e-17
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 83 4e-17
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 82 9e-17
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 80 4e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 5e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 68 2e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 62 1e-10
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 28 1.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 2.1
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.6
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 8.4
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 211 bits (516), Expect = 9e-56
Identities = 104/212 (49%), Positives = 145/212 (68%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
++SF +MNLSRP++K + +L F PT IQ TIP+ALLGKD+ +++PI
Sbjct: 258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPI 317
Query: 232 LERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV 411
LERLLY+ K TRVL+L PTREL Q H+V ++A F +K QE
Sbjct: 318 LERLLYRPKKVPT-TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQE 376
Query: 412 LRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPK 591
LR+ PDIVIATPGR IDH+RN+ F + +IE++V+DEADRML++ FA+++ EII+ C
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKS 436
Query: 592 RQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
RQTMLFSATM+++V DL +SL +PV++FV++
Sbjct: 437 RQTMLFSATMTDKVDDLIRLSLNRPVRVFVDN 468
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 132 bits (318), Expect = 9e-32
Identities = 76/214 (35%), Positives = 124/214 (57%), Gaps = 2/214 (0%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F ++ LS + KAI + F T IQ +IP L G+DV +++P +E
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE- 149
Query: 241 LLYKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
+LY K R T V+++ PTREL Q+ V ++L ++ + + + L
Sbjct: 150 MLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLV 209
Query: 418 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKR 594
+ ++++ATPGRL+DH++NT F ++ LV+DEADR+L+ F ++M++I++ S R
Sbjct: 210 KGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENR 269
Query: 595 QTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNXG 696
QT+LFSAT + +V+DLA +SL KP L+VN + G
Sbjct: 270 QTLLFSATQTTKVEDLARISL-KPGPLYVNVDSG 302
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 129 bits (312), Expect = 5e-31
Identities = 79/220 (35%), Positives = 116/220 (52%), Gaps = 2/220 (0%)
Frame = +1
Query: 55 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
++F +M L++ L++AI F PTPIQ TIP+ L G+DV +++P++
Sbjct: 69 SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI 128
Query: 235 ERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVL 414
E L K+ + TR L+L P REL Q V + ++ ++ Q S+L
Sbjct: 129 EHL--KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLL 186
Query: 415 RQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR 594
PDIV+ATPGR + H++ L SIE +V DEADR+ + FA Q+ EI+ R
Sbjct: 187 SGKPDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSR 245
Query: 595 QTMLFSATMSEEVKDLAAVSLKKP--VKLFVNSNXGGGLQ 708
QT+LFSAT+ + D A L+ P V+L V S LQ
Sbjct: 246 QTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQ 285
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 116 bits (280), Expect = 3e-27
Identities = 67/210 (31%), Positives = 107/210 (50%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + + L +A L F PTPIQ IP+ L +DV + LP+++
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 238 RLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
L + VL PTREL Q+ + D+ Q L
Sbjct: 107 ELWNNPSPFFAV----VLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALS 162
Query: 418 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQ 597
+ P +++ TPGRL+DH+ NT F L +++ L++DEADR+LD F + +I++ +R+
Sbjct: 163 KKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERR 222
Query: 598 TMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
T+LFSATM+ +V+ L SL +PV++ V+S
Sbjct: 223 TLLFSATMTSKVEKLQRASLHQPVRVAVSS 252
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 112 bits (270), Expect = 6e-26
Identities = 67/210 (31%), Positives = 107/210 (50%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + L++P A+ + +F+ T IQ IP AL G+D+ +++P++E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 241 LLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ 420
L K LV+ PTREL Q ++ + + K ++ L +
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR 160
Query: 421 NPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQT 600
+I++ TPGRL+ HI +F +++L+LDEADR+LD F + I+ RQT
Sbjct: 161 M-NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQT 219
Query: 601 MLFSATMSEEVKDLAAVSLKKPVKLFVNSN 690
MLFSAT ++ VKDLA +SL+ P + V+ N
Sbjct: 220 MLFSATQTKSVKDLARLSLQNPDFISVHEN 249
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 112 bits (269), Expect = 7e-26
Identities = 78/220 (35%), Positives = 106/220 (48%), Gaps = 5/220 (2%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + NL L +AI F PT +Q+ TIP+AL GKD+ Y++PILE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 238 RLLYKAKGGDRITR---VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVK--YQ 402
LL K K D R L+LVPTREL QV+ V +L F + Q
Sbjct: 75 -LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 403 ESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC 582
+L PDIVIATP R + H+ + L ++ LV+DEAD ML + E MK + R
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHVA-SGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSL 192
Query: 583 SPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNXGGG 702
Q+ L SAT+S+ + L + + P L V G
Sbjct: 193 PRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASG 232
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 109 bits (261), Expect = 7e-25
Identities = 74/201 (36%), Positives = 99/201 (49%), Gaps = 5/201 (2%)
Frame = +1
Query: 103 GSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAKGGDRITRV 282
G N+ PTPIQAAT P L G+DV + +P L+ L + RV
Sbjct: 181 GLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ-YLNGLSDNKSVPRV 239
Query: 283 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLID 462
LV+ PTREL Q + L Q K +++ +N ++I TPGRL+D
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAKNASVIIGTPGRLLD 298
Query: 463 HIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-----SPKRQTMLFSATMSE 627
I N S + LVLDEADRMLD F + ++ II + RQT+ FSAT E
Sbjct: 299 LI-NDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPE 357
Query: 628 EVKDLAAVSLKKPVKLFVNSN 690
V+ LAA LK PVK+ + S+
Sbjct: 358 SVRALAATFLKDPVKITIGSD 378
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 106 bits (254), Expect = 5e-24
Identities = 70/212 (33%), Positives = 100/212 (47%), Gaps = 4/212 (1%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
S+ LS + I SL + PT IQA IP G+DV ++LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 238 RLLYKA--KGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV 411
+ + K G+ + ++ PTREL Q+ + + +K Q +
Sbjct: 479 HIKDQRPLKTGEGPIAI-IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIAD 537
Query: 412 LRQNPDIVIATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS 585
L++ +IV+ TPGR+ID + LH LVLDEADRM D F Q+ II
Sbjct: 538 LKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIR 597
Query: 586 PKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
P RQT+LFSAT ++ LA LKKPV++ V
Sbjct: 598 PDRQTVLFSATFPRAMEALARKVLKKPVEITV 629
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99 bits (238), Expect = 4e-22
Identities = 69/202 (34%), Positives = 100/202 (49%), Gaps = 2/202 (0%)
Frame = +1
Query: 88 LMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKA--KG 261
++K + L F PTPIQ P+A+ G+D+ Y LP + + +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
Query: 262 GDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIA 441
GD VLVL PTREL Q+ + + Q L + +I IA
Sbjct: 193 GDGPI-VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIA 251
Query: 442 TPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATM 621
TPGRL+D + + + L + LVLDEADRMLD F Q+++I+ Q P RQT++FSAT
Sbjct: 252 TPGRLLDMLDSNKT-NLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATW 310
Query: 622 SEEVKDLAAVSLKKPVKLFVNS 687
+EV+ LA L +++ V S
Sbjct: 311 PKEVQRLARDYLNDYIQVTVGS 332
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 94.7 bits (225), Expect = 2e-20
Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 11/219 (5%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
SF ++N+ + L A+ + F TP+QA IP+ L KD+ Y+LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 238 RLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKY------ 399
++ + + L++ PTREL Q+ VT++L + Y
Sbjct: 62 KVTRRDTDETGLG-ALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 400 ----QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKE 567
S +NP +VI TPGRL + + + S +E+L+LDEAD ++D F ++
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQS 177
Query: 568 IIRQCSPKRQTMLFSATMSEEVKD-LAAVSLKKPVKLFV 681
II Q +R+T LFSATM++ V L L+ V++ V
Sbjct: 178 IISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSV 216
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 91.5 bits (217), Expect = 1e-19
Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 18/225 (8%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + L+ L++ I + PTP+Q +IPI G+D+ ++ PIL
Sbjct: 171 FTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSL 230
Query: 241 LLYKAKGGDRITR--------------VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXX 378
K + + L+L PTREL Q+H +R+
Sbjct: 231 AFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVY 290
Query: 379 XXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ 558
D++ Q + Q D++ ATPGRL+D I + L +I+ LVLDEADRMLD F Q
Sbjct: 291 GGADIRAQIRQIDQGCDLLSATPGRLVDLI-DRGRISLANIKFLVLDEADRMLDMGFEPQ 349
Query: 559 MKEIIRQCS----PKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
++ I+ +RQT++FSAT +++ LA LK V L V
Sbjct: 350 IRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSV 394
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 89.0 bits (211), Expect = 8e-19
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 1/217 (0%)
Frame = +1
Query: 43 YDENA-SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXY 219
YDE +F +MNL L++ I + F P+ IQ I L +DV +
Sbjct: 14 YDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF 73
Query: 220 MLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKY 399
+ +L+++ K + L+L PTREL Q+ V L V+
Sbjct: 74 SISVLQKIDTSLKQ----CQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRD 129
Query: 400 QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQ 579
+ L+ +V+ TPGR+ D I+ + ++++ VLDEAD ML F +Q+ +I +
Sbjct: 130 DMAALQAGVHVVVGTPGRVHDMIQRR-ALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQL 188
Query: 580 CSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSN 690
P Q +L SATM ++V ++ ++ P+++ V +
Sbjct: 189 LPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKD 225
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 87.8 bits (208), Expect = 2e-18
Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 5/216 (2%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
+ F + L L++AI F HP+ +Q IP ++LG DV ++L
Sbjct: 50 STGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLST 109
Query: 232 LERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXX-DVKYQES 408
L+++ + D VLVL TREL Q+ + +++ ++K
Sbjct: 110 LQQI----EPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDME 165
Query: 409 VLR---QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIR 576
+ ++P IV+ATPGRL +R ++S++ VLDE D++L+ ++E+ R
Sbjct: 166 AFKDKSKSPHIVVATPGRLNALVREK-ILKVNSVKHFVLDECDKLLESVDMRRDIQEVFR 224
Query: 577 QCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
P++Q M+FSAT+S E++ + ++ P++++V+
Sbjct: 225 ATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVD 260
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 87.8 bits (208), Expect = 2e-18
Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
SF ++ +S L+ + +L PT IQ I L G++ + LPI+E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 238 RLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
+ G L+L PTREL Q+ L D+ Q L
Sbjct: 68 KWSKDPSG----IFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 418 QNPDIVIATPGRLIDHIRNTPS---FGLHSIEVLVLDEADRMLDEYFAEQMKEI--IRQC 582
+ P +V+ATPGRL D IR+ GL I+ LV+DEADR+L FA+ + + +
Sbjct: 124 KRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPA 183
Query: 583 SPKRQTMLFSATMSEEVKDL 642
S RQT+LF+AT+++ ++ L
Sbjct: 184 SEDRQTLLFTATVTDAIRQL 203
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 87.8 bits (208), Expect = 2e-18
Identities = 58/209 (27%), Positives = 96/209 (45%)
Frame = +1
Query: 55 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
+SF MNL L++ I + + P+ +Q+ I G+DV + + IL
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 235 ERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVL 414
+ + R T+ L+L PTREL Q+ V L V L
Sbjct: 81 QSIDLSV----RDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKL 136
Query: 415 RQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR 594
+V TPGR+ D IR + ++++L+LDEAD +L++ F EQ+ +I R P
Sbjct: 137 DYGQHVVSGTPGRVTDMIRRR-NLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT 195
Query: 595 QTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
Q ++ SAT+ ++V ++ PV++ V
Sbjct: 196 QVVVVSATLPQDVLEMTNKFTTNPVRILV 224
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 86.6 bits (205), Expect = 4e-18
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 5/216 (2%)
Frame = +1
Query: 55 ASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL 234
+++ + +LS ++ ++ F P PIQ+ IP A +G D+ + +PIL
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 235 ERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVL 414
E L + + LV+ PTREL Q+ + V+ Q+ +L
Sbjct: 182 EHCLRNVDA--KYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLL 239
Query: 415 RQNPDIVIATPGRLIDHI-RNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII----RQ 579
++P +V+ATPGRL I N + I+ LVLDEADR+L + E++ +++
Sbjct: 240 NKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNP 299
Query: 580 CSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
+RQT +FSAT E ++ ++K + NS
Sbjct: 300 MHTQRQTFIFSATFDEGLQQRLKKNMKGNITEKYNS 335
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 85.0 bits (201), Expect = 1e-17
Identities = 58/205 (28%), Positives = 91/205 (44%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + L R L+ I F P+PIQ +IPIAL G+D+ +++P LE+
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 241 LLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ 420
+ K + L+LVPTREL Q V + L + ++ L
Sbjct: 106 VDTKKSK----IQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLND 161
Query: 421 NPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQT 600
IV+ TPGR++D + V+DEAD++L F +++++ RQ
Sbjct: 162 TVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQI 220
Query: 601 MLFSATMSEEVKDLAAVSLKKPVKL 675
L+SAT VK+ L KP ++
Sbjct: 221 SLYSATFPLIVKNFMDKHLNKPYEI 245
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 83.4 bits (197), Expect = 4e-17
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 3/193 (1%)
Frame = +1
Query: 112 NFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAKGGDRITRVLVL 291
N T IQ IP +D+ Y+ PIL++L GG R +++
Sbjct: 65 NITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG---YRAIIV 121
Query: 292 VPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV--LRQNPDIVIATPGRLIDH 465
PTREL Q++ +L+ F + K QE LR+ D+ I TP RL+
Sbjct: 122 APTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQA 180
Query: 466 IRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC-SPKRQTMLFSATMSEEVKDL 642
I+ SF +E V+DEADR+ + F EQ I+ C S LFSAT+ V++L
Sbjct: 181 IQTGLSF--EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEEL 238
Query: 643 AAVSLKKPVKLFV 681
A V P+++ V
Sbjct: 239 AKVVTVDPIRIIV 251
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 82.2 bits (194), Expect = 9e-17
Identities = 64/240 (26%), Positives = 112/240 (46%), Gaps = 11/240 (4%)
Frame = +1
Query: 49 ENASFYNMNLSRPLMKAIGS-LNFVHPTPIQAATIPIALLG---KDVXXXXXXXXXXXXX 216
+ +F + L L + + +N PT IQ+ +P ALL KD
Sbjct: 136 KTTNFAGVQLDTQLADHLNNKMNISAPTAIQSCCLP-ALLNTDDKDAFIEAQTGSGKTLA 194
Query: 217 YMLPILERLLYKAKGGDRITR---VLVLVPTRELGAQVHAVTRQLAQ---FXXXXXXXXX 378
Y+LPI++RL+ K T +++ PTREL Q++ V +L
Sbjct: 195 YLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVI 254
Query: 379 XXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ 558
K +++ +R+ +I+I TPGRL DH+ NT + + + +VLDE DR++D F E
Sbjct: 255 GGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEET 314
Query: 559 MKEIIRQCSPKRQTMLFSATM-SEEVKDLAAVSLKKPVKLFVNSNXGGGLQLEAGVREDT 735
+ +I+ + + ++ S +V L + ++K VK +S L L++ + E+T
Sbjct: 315 LTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKDALYLKSSIVEET 374
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 80.2 bits (189), Expect = 4e-16
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Frame = +1
Query: 31 EPPPYDENAS--FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIAL----------LGKD 174
EP D N + F ++N+S L++ + N +QAA +P+ L G D
Sbjct: 116 EPITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGD 175
Query: 175 VXXXXXXXXXXXXXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFX 354
V Y++PI++ L ++ R+ R +V+VPTREL QV
Sbjct: 176 VCVSAATGSGKTLSYVIPIVQCLSHRTV--PRL-RCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 355 XXXXXXXXXXXDVKYQESVLRQNP-----DIVIATPGRLIDHIRNTPSFGLHSIEVLVLD 519
++++ L + D++++TPGRL+DHIRN SF L + +V+D
Sbjct: 233 GLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVID 292
Query: 520 EADRMLDEYFAEQMKEIIRQCS-PK 591
EADR+LD+ F + + ++ + S PK
Sbjct: 293 EADRLLDQSFQDWVDTVMMEISHPK 317
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 76.6 bits (180), Expect = 5e-15
Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 23/227 (10%)
Frame = +1
Query: 76 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI---LERLL 246
L ++K + +N+ P+ IQ A IP+ L KD+ +++P+ + +L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 247 YKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN 423
+ + +VL PTREL Q+ + A+ + Q + Q
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375
Query: 424 PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII---------- 573
IV+ATPGRL+D + F L +V+DEADRMLD F + + +I+
Sbjct: 376 AHIVVATPGRLLDCLERR-LFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASE 434
Query: 574 ---------RQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
S +RQT++FSAT+ V +LA L +PV L + +
Sbjct: 435 KDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGN 481
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 67.7 bits (158), Expect = 2e-12
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +1
Query: 283 LVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ-NPDIVIATPGRLI 459
++L PTREL Q+ R+L +E+ +R+ N +++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 460 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQ-CSPKRQTMLFSATMSEEVK 636
DH++N S + +LDEADR++D FAE + I + K + + FSATM +V
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVS 235
Query: 637 DL 642
++
Sbjct: 236 NV 237
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.1 bits (144), Expect = 1e-10
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 3/199 (1%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLG--KDVXXXXXXXXXXXXXYMLPI 231
SF + L L+K I S+ F P+ IQ +P+ L +++ + L +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 232 LERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV 411
L R+ + + L P+REL Q+ V ++ ++ K +
Sbjct: 175 LSRVDASVPK----PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKI- 229
Query: 412 LRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPK 591
+ IVI TPG ++D ++ I+V VLDEAD MLD+ I+ P+
Sbjct: 230 ---DAQIVIGTPGTVMDLMKRR-QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPR 285
Query: 592 R-QTMLFSATMSEEVKDLA 645
Q +LFSAT SE V+ A
Sbjct: 286 NTQIVLFSATFSERVEKYA 304
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 351 ELSQLSCDCMDLST-KFSSWHKYQDPGDPVPSFR 253
ELSQ+ + +D +T +F ++H DP D P F+
Sbjct: 335 ELSQIPTENIDSTTDRFDNYHWMPDPIDAAPDFK 368
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 500 SRFWCWTKLTGCWMNT 547
SRF+C+TK+ G WM T
Sbjct: 2368 SRFYCYTKMLGEWMFT 2383
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 85 PLMKAIGSLNFVHPTP 132
PL +AIGS +F+HP P
Sbjct: 127 PLRRAIGSYDFLHPRP 142
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -3
Query: 759 SRVHSRSLXILTNSCLKLKATSXIGVHEQFDGFLQGNRRQVLDFLAHGGREQHGLT 592
SRVH+ + + LK K ++ G+++ F G+++ + Q D LA + LT
Sbjct: 406 SRVHTSLIEERNSIYLKPKTSAAHGLYDWFSGYIRKPQSQDEDTLASTDKTAADLT 461
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 633 DFLAHGGREQHGL--TFRGTLTDD 568
DF+ +GGREQH + R LT+D
Sbjct: 82 DFIVYGGREQHLMFPLLRAGLTND 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,718
Number of Sequences: 5004
Number of extensions: 67796
Number of successful extensions: 257
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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