Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_K17
(902 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 202 3e-52
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 142 4e-34
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 133 2e-31
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 126 3e-29
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 124 8e-29
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 124 8e-29
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 123 1e-28
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 122 2e-28
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 116 2e-26
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 113 1e-25
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 113 1e-25
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 113 1e-25
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 111 6e-25
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 110 1e-24
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 109 2e-24
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 106 2e-23
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 106 2e-23
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 106 2e-23
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 105 3e-23
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 105 5e-23
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 104 9e-23
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 103 2e-22
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 103 2e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 103 2e-22
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 103 2e-22
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 101 9e-22
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 99 2e-21
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 99 2e-21
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 100 3e-21
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 100 3e-21
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 100 3e-21
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 97 1e-20
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 97 2e-20
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 97 2e-20
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 97 2e-20
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 96 2e-20
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 95 4e-20
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 95 4e-20
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 95 4e-20
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 95 6e-20
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 95 6e-20
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 95 6e-20
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 95 7e-20
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 92 4e-19
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 91 7e-19
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 90 2e-18
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 86 3e-17
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 85 8e-17
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 83 2e-16
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 83 2e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 82 6e-16
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 81 7e-16
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 81 1e-15
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 76 3e-14
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 75 5e-14
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 75 9e-14
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 74 1e-13
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 71 8e-13
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 68 7e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 68 7e-12
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 63 3e-10
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 58 6e-09
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 53 3e-07
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 46 3e-05
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 29 3.2
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 29 4.2
At4g34265.2 68417.m04871 expressed protein 28 7.4
At4g34265.1 68417.m04870 expressed protein 28 7.4
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 202 bits (493), Expect = 3e-52
Identities = 102/206 (49%), Positives = 137/206 (66%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F +NLSRPL++A +L + PTPIQAA IP+AL G+D+ + LP LE
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 238 RLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
RLL++ K TRVL+L PTREL Q+H++ + LAQF V+ QE VLR
Sbjct: 228 RLLFRPKRVFA-TRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLR 286
Query: 418 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQ 597
PDIV+ATPGR+IDH+RN+ S L + VL+LDEADR+L FA ++ E++R C +RQ
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQ 346
Query: 598 TMLFSATMSEEVKDLAAVSLKKPVKL 675
TMLFSATM+EEVK+L +SL KP++L
Sbjct: 347 TMLFSATMTEEVKELVKLSLNKPLRL 372
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 142 bits (343), Expect = 4e-34
Identities = 79/212 (37%), Positives = 122/212 (57%), Gaps = 1/212 (0%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
N +F +++LS K+I + F T IQA IP ++G+DV +++P
Sbjct: 153 NKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA 212
Query: 232 LERLLYKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQES 408
+E LLY+ K R T VLV+ PTREL Q + V ++L ++ K +
Sbjct: 213 VE-LLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAE 271
Query: 409 VLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSP 588
+L + ++++ATPGRL+DH+ NT F +++ LV+DEADR+L++ F E +K+I+
Sbjct: 272 ILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPK 331
Query: 589 KRQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
RQT LFSAT S +V+DLA VSL PV + V+
Sbjct: 332 TRQTSLFSATQSAKVEDLARVSLTSPVYIDVD 363
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 133 bits (321), Expect = 2e-31
Identities = 79/212 (37%), Positives = 118/212 (55%), Gaps = 1/212 (0%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
N +F +++LS AI + F + T IQA +I L GKDV +++P
Sbjct: 88 NVTFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPA 147
Query: 232 LERLLYKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQES 408
+E LL+K + R T V+V+ PTREL Q V +L + + + +
Sbjct: 148 VE-LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQ 206
Query: 409 VLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSP 588
+ ++VIATPGRL+DH++NT +F ++ LV+DEADR+L+E F E M +I++
Sbjct: 207 RIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPK 266
Query: 589 KRQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
RQT LFSAT + +VKDLA VSL PV + V+
Sbjct: 267 TRQTALFSATQTSKVKDLARVSLTSPVHVDVD 298
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 126 bits (303), Expect = 3e-29
Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 2/223 (0%)
Frame = +1
Query: 49 ENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLP 228
++ F ++NL + AI + PTPIQ T+P+ L G DV +++P
Sbjct: 26 KSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIP 85
Query: 229 ILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQES 408
+LE+L G R L+L PTR+L Q T++L +F ++ Q
Sbjct: 86 MLEKLKQHVPQGG--VRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFE 143
Query: 409 VLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSP 588
L + PD++IATPGRL+ + L ++E +V DEAD + FAEQ+ +I+ Q S
Sbjct: 144 ELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSE 203
Query: 589 KRQTMLFSATMSEEVKDLAAVSLKKP--VKLFVNSNXGGGLQL 711
RQT+LFSAT+ + + A L++P V+L V + L+L
Sbjct: 204 NRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKL 246
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 124 bits (299), Expect = 8e-29
Identities = 79/210 (37%), Positives = 108/210 (51%), Gaps = 1/210 (0%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + N +++AI L F PTPIQA P+AL G+D+ Y+LP L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 241 LLYKAK-GGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
+ + + G D VL+L PTREL Q+ +R+ Q LR
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286
Query: 418 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQ 597
+ +IVIATPGRLID + + L + LVLDEADRMLD F Q+++I+ Q P RQ
Sbjct: 287 RGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 598 TMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
T+L+SAT EV+ LA L+ P K + S
Sbjct: 346 TLLWSATWPREVETLARQFLRDPYKAIIGS 375
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 124 bits (299), Expect = 8e-29
Identities = 79/210 (37%), Positives = 108/210 (51%), Gaps = 1/210 (0%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + N +++AI L F PTPIQA P+AL G+D+ Y+LP L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 241 LLYKAK-GGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
+ + + G D VL+L PTREL Q+ +R+ Q LR
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286
Query: 418 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQ 597
+ +IVIATPGRLID + + L + LVLDEADRMLD F Q+++I+ Q P RQ
Sbjct: 287 RGVEIVIATPGRLIDMLECQHT-NLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 598 TMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
T+L+SAT EV+ LA L+ P K + S
Sbjct: 346 TLLWSATWPREVETLARQFLRDPYKAIIGS 375
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 123 bits (297), Expect = 1e-28
Identities = 74/214 (34%), Positives = 110/214 (51%), Gaps = 8/214 (3%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + + L+KA L + +P+ IQA +P AL GKDV + +PIL+
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 238 RLLY--------KAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDV 393
LL K + D VL PTREL Q+ L D
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDR 129
Query: 394 KYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII 573
Q L + P +++ATPGRL DH+ +T F L S++ LVLDEADR+L+E F + + +I+
Sbjct: 130 MQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQIL 189
Query: 574 RQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKL 675
+ +R+T LFSATM+++V+ L L+ PVK+
Sbjct: 190 EEIPLERKTFLFSATMTKKVRKLQRACLRNPVKI 223
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 122 bits (295), Expect = 2e-28
Identities = 67/209 (32%), Positives = 110/209 (52%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + +S + + +V T +Q+A IP AL G+D+ +++PILE+
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 241 LLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ 420
L + + +++ PTREL AQ V ++ +F + E
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVH 192
Query: 421 NPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQT 600
+I++ PGRL+ H+ TP+F +++L+LDEADR+LD F Q+ II Q RQT
Sbjct: 193 EMNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQT 252
Query: 601 MLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
+LFSAT +++VKDLA +SL+ P + V++
Sbjct: 253 LLFSATQTKKVKDLARLSLRDPEYISVHA 281
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain;
identical to cDNA DEAD box RNA helicase, RH26 GI:3776024
Length = 850
Score = 116 bits (279), Expect = 2e-26
Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 9/223 (4%)
Frame = +1
Query: 43 YDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYM 222
Y F LS +KAI F T +Q AT+PI L GKDV ++
Sbjct: 378 YLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFL 437
Query: 223 LPILERLLYKAKGGDRITR-----VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXX 387
LP +E ++ K+ R +R VLV+ PTREL +Q A L ++
Sbjct: 438 LPAIEAVI-KSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGG 496
Query: 388 D-VKYQESVLRQNP-DIVIATPGRLIDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAE 555
+ ++ ++ NP I++ATPGRL DHI NT F L ++VLVLDEAD +LD F
Sbjct: 497 TKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRR 556
Query: 556 QMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
++ II +RQT LFSAT+ EEV+ + V+LK+ + F+N
Sbjct: 557 DIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKRDHE-FIN 598
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 113 bits (273), Expect = 1e-25
Identities = 80/237 (33%), Positives = 117/237 (49%), Gaps = 8/237 (3%)
Frame = +1
Query: 43 YDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYM 222
Y F + LS +KAI + T +Q AT+PI L GKDV ++
Sbjct: 50 YLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFL 109
Query: 223 LPILERLLYKAKGGDRITR----VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXD 390
LP +E ++ R LV+ PTREL Q L ++
Sbjct: 110 LPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGT 169
Query: 391 -VKYQESVLRQNP-DIVIATPGRLIDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAEQ 558
+ ++ ++ NP I++ATPGRL DHI NTP F L ++VLVLDEAD +LD F +
Sbjct: 170 RLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKD 229
Query: 559 MKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNXGGGLQLEAGVRE 729
++ II +RQT LFSAT+ EEV+ + V+L++ + FVN G ++ VR+
Sbjct: 230 IERIISAVPKERQTFLFSATVPEEVRQICLVALRRDHE-FVNCVHEGTIETHQQVRQ 285
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 113 bits (273), Expect = 1e-25
Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 9/223 (4%)
Frame = +1
Query: 43 YDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYM 222
Y F LS +K I F T +Q AT+P+ L GKD+ ++
Sbjct: 76 YLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFL 135
Query: 223 LPILERLLYKAKGGDRITR-----VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXX 387
LP +E ++ KA R R VLV+ PTREL Q A L ++
Sbjct: 136 LPSIEAVI-KAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGG 194
Query: 388 D-VKYQESVLRQNP-DIVIATPGRLIDHIRNTPSFG--LHSIEVLVLDEADRMLDEYFAE 555
+ ++ L+++P I++ATPGRL DHI NT F L ++VLVLDEAD +LD F
Sbjct: 195 TKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRR 254
Query: 556 QMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
+++ II +RQT LFSAT+S+EV+ + V+LK+ + FVN
Sbjct: 255 EIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKRDHE-FVN 296
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 113 bits (273), Expect = 1e-25
Identities = 70/214 (32%), Positives = 105/214 (49%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
P PY +F + L +++ + S F PTPIQA T PIAL +D+
Sbjct: 431 PAPY---ITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL 487
Query: 214 XYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDV 393
Y++P L + VL+L PTREL Q+ + +
Sbjct: 488 GYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPK 547
Query: 394 KYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII 573
Q L + DIV+ATPGRL D I + +LVLDEADRMLD F Q+++I+
Sbjct: 548 GPQLKELERGADIVVATPGRLND-ILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIV 606
Query: 574 RQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKL 675
+ P+RQT++++AT +EV+ +A+ L PV++
Sbjct: 607 NEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQV 640
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 111 bits (267), Expect = 6e-25
Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 4/211 (1%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
++ L+ ++ + LN+ P PIQ +PI + G+D ++LP+L
Sbjct: 531 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 590
Query: 241 LLYK--AKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVL 414
+ + + GD LV+ PTREL Q+H+ R+ ++ V Q S L
Sbjct: 591 IKDQPPVEAGDGPIG-LVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISEL 649
Query: 415 RQNPDIVIATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSP 588
++ +IV+ TPGR+ID + + L + LV+DEADRM D F Q+ II+ P
Sbjct: 650 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRP 709
Query: 589 KRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
+RQT+LFSAT +V+ LA L KPV++ V
Sbjct: 710 ERQTVLFSATFPRQVETLARKVLNKPVEIQV 740
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to
RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 110 bits (265), Expect = 1e-24
Identities = 68/211 (32%), Positives = 108/211 (51%), Gaps = 4/211 (1%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
++ L+ ++ + LN+ P PIQA +PI + G+D ++LP+L
Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 457
Query: 241 LLYK--AKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVL 414
+ + + GD LV+ PTREL Q+++ R+ ++ V Q S L
Sbjct: 458 IKDQPPVEAGDGPIG-LVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISEL 516
Query: 415 RQNPDIVIATPGRLIDHIRNTPS--FGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSP 588
++ +IV+ TPGR+ID + + L + LV+DEADRM D F Q+ I++ P
Sbjct: 517 KRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 576
Query: 589 KRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
RQT+LFSAT +V+ LA L KPV++ V
Sbjct: 577 DRQTVLFSATFPRQVETLARKVLNKPVEIQV 607
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 109 bits (262), Expect = 2e-24
Identities = 78/231 (33%), Positives = 110/231 (47%), Gaps = 8/231 (3%)
Frame = +1
Query: 7 EYDSDFFEEPPPYDENASFYNMNLSRP--LMKAIGSLNFVHPTPIQAATIPIALLGKDVX 180
EYD D D+ LS P L +++ H PIQ A + AL G+D+
Sbjct: 84 EYDLDGDNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDII 143
Query: 181 XXXXXXXXXXXXYMLPILERLLYKA------KGGDRITRVLVLVPTRELGAQVHAVTRQL 342
+ +PI++RL +A + R+ + LVL PTREL QV ++
Sbjct: 144 ARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKES 203
Query: 343 AQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDE 522
A + + Q+S L + D+V+ TPGR+ID I S L +E LVLDE
Sbjct: 204 APYLSTVCVYGGVSYTI--QQSALTRGVDVVVGTPGRIIDLIEGR-SLKLGEVEYLVLDE 260
Query: 523 ADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKL 675
AD+ML F E ++ I+ KRQ+MLFSATM VK LA L P+ +
Sbjct: 261 ADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNI 311
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 106 bits (255), Expect = 2e-23
Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 1/219 (0%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP SF L++ + S F PTPIQA + PIA+ G+D+
Sbjct: 154 PPPL---MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 214 XYMLPILERLLYKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXD 390
Y++P L + + R+ +LVL PTREL Q+ + +
Sbjct: 211 GYLIPGFLHL-QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAP 269
Query: 391 VKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEI 570
Q L + DIV+ATPGRL D I L I LVLDEADRMLD F Q+++I
Sbjct: 270 KGPQLRDLERGADIVVATPGRLND-ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKI 328
Query: 571 IRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
+++ KRQT++++AT + V+ +AA L P ++ + +
Sbjct: 329 VKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGN 367
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 106 bits (255), Expect = 2e-23
Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 1/219 (0%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP SF L++ + S F PTPIQA + PIA+ G+D+
Sbjct: 154 PPPL---MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 214 XYMLPILERLLYKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXD 390
Y++P L + + R+ +LVL PTREL Q+ + +
Sbjct: 211 GYLIPGFLHL-QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAP 269
Query: 391 VKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEI 570
Q L + DIV+ATPGRL D I L I LVLDEADRMLD F Q+++I
Sbjct: 270 KGPQLRDLERGADIVVATPGRLND-ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKI 328
Query: 571 IRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
+++ KRQT++++AT + V+ +AA L P ++ + +
Sbjct: 329 VKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGN 367
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 106 bits (255), Expect = 2e-23
Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 1/219 (0%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP SF L++ + S F PTPIQA + PIA+ G+D+
Sbjct: 154 PPPL---MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
Query: 214 XYMLPILERLLYKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXD 390
Y++P L + + R+ +LVL PTREL Q+ + +
Sbjct: 211 GYLIPGFLHL-QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAP 269
Query: 391 VKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEI 570
Q L + DIV+ATPGRL D I L I LVLDEADRMLD F Q+++I
Sbjct: 270 KGPQLRDLERGADIVVATPGRLND-ILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKI 328
Query: 571 IRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
+++ KRQT++++AT + V+ +AA L P ++ + +
Sbjct: 329 VKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNIGN 367
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 105 bits (253), Expect = 3e-23
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 3/214 (1%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
SF ++ +++ + F PTPIQ+ P+A+ G+D+ Y+LP +
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 238 RLLYK---AKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQES 408
+ + A G I VLVL PTREL Q+ + Q
Sbjct: 160 HVNAQPMLAHGDGPI--VLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVR 217
Query: 409 VLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSP 588
L++ +IVIATPGRLID + + + L + LVLDEADRMLD F Q+++I+ P
Sbjct: 218 DLQKGVEIVIATPGRLIDMMESNNT-NLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRP 276
Query: 589 KRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSN 690
RQT+ +SAT +EV+ L+ L P K+ + S+
Sbjct: 277 DRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSS 310
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 105 bits (251), Expect = 5e-23
Identities = 72/240 (30%), Positives = 115/240 (47%), Gaps = 11/240 (4%)
Frame = +1
Query: 28 EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXX 207
E+ PP +N F +M PL++ + +HPTPIQ +P+ L G+D+
Sbjct: 90 EDIPPPIKN--FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 147
Query: 208 XXXYMLPIL-----ERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQ------FX 354
++LP++ E ++ G+ LV+ P+REL Q + V Q +
Sbjct: 148 TLVFVLPMIILALQEEIMMPIAAGEGPI-ALVICPSRELAKQTYDVVEQFVASLVEDGYP 206
Query: 355 XXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRM 534
D++ Q V+++ IV+ATPGRL D I L + +L LDEADR+
Sbjct: 207 RLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKD-ILAKKKMSLDACRLLTLDEADRL 265
Query: 535 LDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNXGGGLQLE 714
+D F + ++ + +RQT+LFSATM +++ A +L KPV VN G L+
Sbjct: 266 VDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVT--VNVGRAGAANLD 323
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 104 bits (249), Expect = 9e-23
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 1/212 (0%)
Frame = +1
Query: 55 ASFYNMNLSRPLM-KAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
A+ +N L P + + S F P+PIQA + PIA+ +D+ Y++P
Sbjct: 228 AAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG 287
Query: 232 LERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESV 411
L +LVL PTREL Q+ + + Q
Sbjct: 288 FMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKE 347
Query: 412 LRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPK 591
+ + DIV+ATPGRL D I LH + LVLDEADRMLD F Q+++I+ + K
Sbjct: 348 IERGVDIVVATPGRLND-ILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTK 406
Query: 592 RQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
RQT++++AT +EV+ +AA L P ++ + +
Sbjct: 407 RQTLMYTATWPKEVRKIAADLLVNPAQVNIGN 438
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 103 bits (247), Expect = 2e-22
Identities = 71/238 (29%), Positives = 113/238 (47%), Gaps = 11/238 (4%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP +F +M RP++ + V PTPIQ +P+ L G+D+
Sbjct: 142 PPPIK---NFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTL 198
Query: 214 XYMLPIL-----ERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQL------AQFXXX 360
++LP++ E ++ G+ L++ P+REL Q + V Q A +
Sbjct: 199 VFVLPMIMIALQEEMMMPIAAGEGPIG-LIVCPSRELARQTYEVVEQFVAPLVEAGYPPL 257
Query: 361 XXXXXXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLD 540
D++ Q V+++ IV+ATPGRL D + L + L LDEADR++D
Sbjct: 258 RSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKK-KMSLDACRYLTLDEADRLVD 316
Query: 541 EYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVNSNXGGGLQLE 714
F + ++E+ +RQT+LFSATM +++ A +L KPV VN G L+
Sbjct: 317 LGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVT--VNVGRAGAANLD 372
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 103 bits (247), Expect = 2e-22
Identities = 63/208 (30%), Positives = 110/208 (52%), Gaps = 4/208 (1%)
Frame = +1
Query: 76 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKA 255
LS +++A+ +F TP+QAATIP+ KDV +++P++E L
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 256 KGGDRITRVL--VLVPTRELGAQVHAVTRQ-LAQFXXXXXXXXXXXXDVKYQESVLRQNP 426
+ +V+ ++ PTREL Q++ V + ++ +VK ++ +
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 427 -DIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTM 603
+++I TPGRL D + ++E+L+LDEADR+L+ F Q+ II + +R+T
Sbjct: 143 CNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTG 202
Query: 604 LFSATMSEEVKDLAAVSLKKPVKLFVNS 687
LFSAT +E V++LA L+ PV++ V +
Sbjct: 203 LFSATQTEGVEELAKAGLRNPVRVEVRA 230
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 103 bits (247), Expect = 2e-22
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 1/209 (0%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + S +M AI + PT IQ +PI L G+DV ++LP++
Sbjct: 229 TFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
Query: 238 RLLYKAK-GGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVL 414
++ + + D ++ PTREL Q+ ++ ++ Q L
Sbjct: 289 HIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKEL 348
Query: 415 RQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKR 594
+ +IV+ATPGRLID ++ + + LVLDEADRM D F Q++ I+ Q P R
Sbjct: 349 KAGCEIVVATPGRLIDMLK-MKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDR 407
Query: 595 QTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
QT+LFSATM +V+ LA L P+++ V
Sbjct: 408 QTLLFSATMPWKVEKLAREILSDPIRVTV 436
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 103 bits (246), Expect = 2e-22
Identities = 76/249 (30%), Positives = 124/249 (49%), Gaps = 21/249 (8%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGS-LNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLP 228
+ SF ++ L L + + F PT +QA IP+ L G+DV Y+ P
Sbjct: 28 SCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAP 87
Query: 229 ILERLLYKAKGGDRI--TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQ 402
++ L + DR T LV+VPTREL QV+ +L + K +
Sbjct: 88 LIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAK 147
Query: 403 ESV-LRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIR- 576
E LR+ I+IATPGRL+DH++NT SF ++ ++ DEAD +L+ + +++++II+
Sbjct: 148 EKARLRKGISILIATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKL 207
Query: 577 ------------QCSPK---RQTMLFSATMSEEVKDLAAVSLKKPVKLFV-NSNXGGGLQ 708
PK +Q +L SAT++++V DLA +SL PV + + N+ L
Sbjct: 208 LGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDNTKLQQNLS 267
Query: 709 LEAGVREDT 735
+E+ D+
Sbjct: 268 IESPAAPDS 276
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 101 bits (241), Expect = 9e-22
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 3/216 (1%)
Frame = +1
Query: 28 EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXX 207
E PP + E LS +++A+ F TP+QA TIP KDV
Sbjct: 12 EAPPRFSE----LKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGK 67
Query: 208 XXXYMLPILERLLYKAKGGDRITRVL--VLVPTRELGAQVHAVTRQLAQFXXXXXXXXXX 381
++LP +E + + +V+ ++ PTREL AQ+H V R +
Sbjct: 68 TLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVR-------LDFAK 120
Query: 382 XXDVKYQESVLRQN-PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ 558
+V+ + L + +++I TPGRL D ++ ++E+L+LDEADR+LD F +Q
Sbjct: 121 CREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQ 180
Query: 559 MKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKP 666
+ II + +R+T LFSAT ++ V DLA L+ P
Sbjct: 181 VNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNP 216
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 99 bits (238), Expect = 2e-21
Identities = 61/202 (30%), Positives = 98/202 (48%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + L R L+K I F P+PIQ +IPIAL G D+ + +P+LE
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE- 184
Query: 241 LLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ 420
K + + + ++LVPTREL Q V ++L+++ ++ L Q
Sbjct: 185 ---KIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQ 241
Query: 421 NPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQT 600
+++ TPGR++D + L +LV+DEAD++L F ++E+I+ RQ
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCV-LKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQF 300
Query: 601 MLFSATMSEEVKDLAAVSLKKP 666
++FSAT VK L+KP
Sbjct: 301 LMFSATFPVTVKAFKDRHLRKP 322
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 99 bits (238), Expect = 2e-21
Identities = 61/202 (30%), Positives = 98/202 (48%)
Frame = +1
Query: 61 FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILER 240
F + L R L+K I F P+PIQ +IPIAL G D+ + +P+LE
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE- 184
Query: 241 LLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ 420
K + + + ++LVPTREL Q V ++L+++ ++ L Q
Sbjct: 185 ---KIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQ 241
Query: 421 NPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQT 600
+++ TPGR++D + L +LV+DEAD++L F ++E+I+ RQ
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCV-LKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQF 300
Query: 601 MLFSATMSEEVKDLAAVSLKKP 666
++FSAT VK L+KP
Sbjct: 301 LMFSATFPVTVKAFKDRHLRKP 322
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 99.5 bits (237), Expect = 3e-21
Identities = 71/226 (31%), Positives = 109/226 (48%), Gaps = 10/226 (4%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP + +F ++L L I +V PTP+Q IPI L G+D+
Sbjct: 155 PPPVN---TFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTA 211
Query: 214 XYMLPILERLL-----YKAKGGDRITRVLVLV-PTRELGAQVHAVTRQLAQFXXXXXXXX 375
+ PI+ ++ + +G + + V++ PTREL +Q+H ++ +
Sbjct: 212 AFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVA 271
Query: 376 XXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAE 555
+ Q L + DI++ATPGRL D + + I L LDEADRMLD F
Sbjct: 272 YGGTPINQQLRELERGVDILVATPGRLNDLLERA-RVSMQMIRFLALDEADRMLDMGFEP 330
Query: 556 QMKEIIRQCS--PK--RQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
Q+++I+ Q P+ RQT+LFSAT E++ LAA L + L V
Sbjct: 331 QIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAV 376
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 99.5 bits (237), Expect = 3e-21
Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 4/204 (1%)
Frame = +1
Query: 76 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKA 255
LS +++A+ F TP+QA TIP KDV ++LP +E +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 256 KGGDRITRVL--VLVPTRELGAQVHAVTRQ-LAQFXXXXXXXXXXXXDVKYQESVLRQN- 423
+ +V+ ++ PTREL AQ+H V ++ +V+ + L +
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 424 PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTM 603
+++I TPGRL D ++ ++E+L+LDEADR+LD F +Q+ II + +R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 604 LFSATMSEEVKDLAAVSLKKPVKL 675
LFSAT ++ V DLA L+ +++
Sbjct: 203 LFSATQTQAVADLAKAGLRNAMEV 226
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 99.5 bits (237), Expect = 3e-21
Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 13/230 (5%)
Frame = +1
Query: 13 DSDFFEEPPPYDE--NASFYNMNLSRPL-MKAIGSLNFVHPTPIQAATIPIALLGKDVXX 183
D+ E+ P+D +A ++ + PL +KA+ + + T +Q AT+ L GKD
Sbjct: 311 DNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALV 370
Query: 184 XXXXXXXXXXXYMLPILERLLYKAKGGDRITRV-----LVLVPTRELGAQVHAVTRQLAQ 348
++LP +E +L G + +V L+L PTREL +Q+ A + L +
Sbjct: 371 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLK 430
Query: 349 FXXXXXXXXXXXXD-VKYQESVLRQNP-DIVIATPGRLIDHIRNTPSFG--LHSIEVLVL 516
F K + L P I+IATPGRL+DHI N L ++++ ++
Sbjct: 431 FHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIV 490
Query: 517 DEADRMLDEYFAEQMKEIIRQCSPK-RQTMLFSATMSEEVKDLAAVSLKK 663
DEAD +LD F +++II C P+ RQ++LFSAT+ +EV+ ++ + LK+
Sbjct: 491 DEADLLLDLGFRRDVEKII-DCLPRQRQSLLFSATIPKEVRRVSQLVLKR 539
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 97.5 bits (232), Expect = 1e-20
Identities = 67/214 (31%), Positives = 99/214 (46%), Gaps = 1/214 (0%)
Frame = +1
Query: 43 YDE-NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXY 219
YDE + SF M L L++ I + F P+ IQ I G DV +
Sbjct: 34 YDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
Query: 220 MLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKY 399
+L++L Y + LVL PTREL Q+ V R L + V+
Sbjct: 94 CSGVLQQLDYALLQ----CQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVRE 149
Query: 400 QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQ 579
+ +L+ +V+ TPGR+ D +R S I++ VLDEAD ML F +Q+ +I +
Sbjct: 150 DQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQL 208
Query: 580 CSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
PK Q +FSATM E ++ + KPV++ V
Sbjct: 209 LPPKIQVGVFSATMPPEALEITRKFMSKPVRILV 242
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 96.7 bits (230), Expect = 2e-20
Identities = 71/226 (31%), Positives = 106/226 (46%), Gaps = 10/226 (4%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP + +F ++L L I +V PTP+Q IPI G+D+
Sbjct: 142 PPPVN---TFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTA 198
Query: 214 XYMLPILERLLY-----KAKGGDRITRVLVLV-PTRELGAQVHAVTRQLAQFXXXXXXXX 375
+ PI+ ++ + +G + + V++ PTREL Q+H R+ +
Sbjct: 199 AFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVA 258
Query: 376 XXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAE 555
V Q L + DI++ATPGRL D + L + L LDEADRMLD F
Sbjct: 259 YGGTPVNQQIRELERGVDILVATPGRLNDLLERG-RVSLQMVRFLALDEADRMLDMGFEP 317
Query: 556 QMKEIIRQCSPK----RQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
Q+++I++Q RQTMLFSAT E++ LA+ L + L V
Sbjct: 318 QIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAV 363
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 96.7 bits (230), Expect = 2e-20
Identities = 62/218 (28%), Positives = 103/218 (47%)
Frame = +1
Query: 13 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 192
D+ + E + F + L R L++ I F P+PIQ +IPIAL G D+
Sbjct: 140 DNRYQTEDVTATKGNEFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAK 199
Query: 193 XXXXXXXXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXX 372
+ +P LE++ + + + ++LVPTREL Q V ++L+++
Sbjct: 200 NGTGKTGAFCIPTLEKI----DPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMV 255
Query: 373 XXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFA 552
++ L Q +++ TPGR++D + L +LV+DEAD++L F
Sbjct: 256 TTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCV-LKDCAMLVMDEADKLLSVEFQ 314
Query: 553 EQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKP 666
++E+I+ RQ ++FSAT VK LKKP
Sbjct: 315 PSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKP 352
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 96.7 bits (230), Expect = 2e-20
Identities = 73/219 (33%), Positives = 98/219 (44%), Gaps = 6/219 (2%)
Frame = +1
Query: 25 FEEPPPYDENAS---FYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXX 195
F P P + S F + L+ ++ L PTP+Q +P L G+DV
Sbjct: 45 FTNPNPSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQT 104
Query: 196 XXXXXXXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXX 375
+ LPIL RL G LV+ PTREL Q+ + L
Sbjct: 105 GSGKTAAFALPILHRLAEDPYG----VFALVVTPTRELAFQLAEQFKALGSCLNLRCSVI 160
Query: 376 XXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFG--LHSIEVLVLDEADRMLDEYF 549
D+ Q L P IVI TPGR+ + N P + LVLDEADR+LD F
Sbjct: 161 VGGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGF 220
Query: 550 AEQMKEIIRQCSPK-RQTMLFSATMSEEVKDLAAVSLKK 663
++++ I QC PK RQT+LFSATM+ ++ L S K
Sbjct: 221 QDELRTIF-QCLPKSRQTLLFSATMTSNLQALLEHSSNK 258
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 96.3 bits (229), Expect = 2e-20
Identities = 64/202 (31%), Positives = 101/202 (50%), Gaps = 2/202 (0%)
Frame = +1
Query: 70 MNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL- 246
+ +S ++KA+ S PIQ A + A+ G+D+ + +PI+++++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIK 168
Query: 247 YKAKGG-DRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN 423
Y AK G R LVL PTREL QV R+ A + Q L
Sbjct: 169 YNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAP--SLDTICLYGGTPIGQQMRQLDYG 226
Query: 424 PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTM 603
D+ + TPGR+ID ++ + L ++ +VLDEAD+ML FAE ++ I+ + KRQ+M
Sbjct: 227 VDVAVGTPGRVIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSM 285
Query: 604 LFSATMSEEVKDLAAVSLKKPV 669
+FSATM ++ L L P+
Sbjct: 286 MFSATMPSWIRSLTKKYLNNPL 307
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 95.5 bits (227), Expect = 4e-20
Identities = 61/218 (27%), Positives = 100/218 (45%)
Frame = +1
Query: 13 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 192
D+ + E + F + L R L+ I F P+PIQ +IPIAL G+D+
Sbjct: 117 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
Query: 193 XXXXXXXXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXX 372
+ +P+LE++ + + + +++VPTREL Q V ++L +
Sbjct: 177 NGTGKTAAFCIPVLEKI----DQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMV 232
Query: 373 XXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFA 552
+K L Q +++ TPGR++D + L VLV+DEAD++L + F
Sbjct: 233 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCV-LKDCSVLVMDEADKLLSQEFQ 291
Query: 553 EQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKP 666
++ +I RQ ++FSAT VKD L P
Sbjct: 292 PSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNP 329
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 95.5 bits (227), Expect = 4e-20
Identities = 61/218 (27%), Positives = 100/218 (45%)
Frame = +1
Query: 13 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 192
D+ + E + F + L R L+ I F P+PIQ +IPIAL G+D+
Sbjct: 117 DTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAK 176
Query: 193 XXXXXXXXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXX 372
+ +P+LE++ + + + +++VPTREL Q V ++L +
Sbjct: 177 NGTGKTAAFCIPVLEKI----DQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMV 232
Query: 373 XXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFA 552
+K L Q +++ TPGR++D + L VLV+DEAD++L + F
Sbjct: 233 TTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCV-LKDCSVLVMDEADKLLSQEFQ 291
Query: 553 EQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKP 666
++ +I RQ ++FSAT VKD L P
Sbjct: 292 PSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNP 329
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 95.5 bits (227), Expect = 4e-20
Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 13/230 (5%)
Frame = +1
Query: 13 DSDFFEEPPPYDE--NASFYNMNLSRPL-MKAIGSLNFVHPTPIQAATIPIALLGKDVXX 183
D+ E+ P+D +A ++ + PL +KA+ + V T +Q AT+ L GKD
Sbjct: 358 DNVMEEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALV 417
Query: 184 XXXXXXXXXXXYMLPILERLLYKAKGGDRITRV-----LVLVPTRELGAQVHAVTRQLAQ 348
++LP +E +L G + +V L+L PTREL +Q+ A + L +
Sbjct: 418 KAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLK 477
Query: 349 -FXXXXXXXXXXXXDVKYQESVLRQNP-DIVIATPGRLIDHIRNTPSFG--LHSIEVLVL 516
+ + L P I+IATPGRL+DHI N L ++++ ++
Sbjct: 478 NHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIV 537
Query: 517 DEADRMLDEYFAEQMKEIIRQCSPK-RQTMLFSATMSEEVKDLAAVSLKK 663
DEAD +LD F +++II C P+ RQ++LFSAT+ +EV+ ++ + LK+
Sbjct: 538 DEADLLLDLGFKRDVEKII-DCLPRQRQSLLFSATIPKEVRRVSQLVLKR 586
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 95.1 bits (226), Expect = 6e-20
Identities = 68/215 (31%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP + +F +++L L I +V PTP+Q IPI L +D+
Sbjct: 147 PPPVN---TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTA 203
Query: 214 XYMLPILERLL----YKAKGGDRITR--VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXX 375
+ PI+ ++ + G R ++L PTREL Q+H ++ +
Sbjct: 204 AFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVA 263
Query: 376 XXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAE 555
+ Q L + DI++ATPGRL D + + I L LDEADRMLD F
Sbjct: 264 YGGTPIHQQLRELERGCDILVATPGRLNDLLERA-RVSMQMIRFLALDEADRMLDMGFEP 322
Query: 556 QMKEIIRQCS--PK--RQTMLFSATMSEEVKDLAA 648
Q+++I+ Q P+ RQTMLFSAT +++ LAA
Sbjct: 323 QIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAA 357
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 95.1 bits (226), Expect = 6e-20
Identities = 68/215 (31%), Positives = 102/215 (47%), Gaps = 10/215 (4%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP + +F +++L L I +V PTP+Q IPI L +D+
Sbjct: 147 PPPVN---TFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTA 203
Query: 214 XYMLPILERLL----YKAKGGDRITR--VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXX 375
+ PI+ ++ + G R ++L PTREL Q+H ++ +
Sbjct: 204 AFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVA 263
Query: 376 XXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAE 555
+ Q L + DI++ATPGRL D + + I L LDEADRMLD F
Sbjct: 264 YGGTPIHQQLRELERGCDILVATPGRLNDLLERA-RVSMQMIRFLALDEADRMLDMGFEP 322
Query: 556 QMKEIIRQCS--PK--RQTMLFSATMSEEVKDLAA 648
Q+++I+ Q P+ RQTMLFSAT +++ LAA
Sbjct: 323 QIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAA 357
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 95.1 bits (226), Expect = 6e-20
Identities = 63/212 (29%), Positives = 98/212 (46%)
Frame = +1
Query: 46 DENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYML 225
D + SF M L L++ I + F P+ IQ I G DV +
Sbjct: 36 DVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCS 95
Query: 226 PILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQE 405
+L++L + + LVL PTREL Q+ V R L + V+ +
Sbjct: 96 GVLQQLDFSLIQ----CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151
Query: 406 SVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCS 585
+L+ +V+ TPGR+ D ++ S +I++ VLDEAD ML F +Q+ +I +
Sbjct: 152 RILQAGVHVVVGTPGRVFDMLKRQ-SLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLP 210
Query: 586 PKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
PK Q +FSATM E ++ + KPV++ V
Sbjct: 211 PKIQVGVFSATMPPEALEITRKFMSKPVRILV 242
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 94.7 bits (225), Expect = 7e-20
Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 2/205 (0%)
Frame = +1
Query: 67 NMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLL 246
++ +S ++KA+ PIQ A + A+ G+D+ + +PI+++++
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 247 -YKAKGG-DRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQ 420
+ AK G + + LVL PTREL QV R+ A + +E L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRE--LNY 237
Query: 421 NPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQT 600
D+ + TPGR+ID ++ + L ++ +VLDEAD+ML FAE ++ I+++ KRQ+
Sbjct: 238 GIDVAVGTPGRIIDLMKRG-ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296
Query: 601 MLFSATMSEEVKDLAAVSLKKPVKL 675
M+FSATM ++ L L P+ +
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTI 321
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 92.3 bits (219), Expect = 4e-19
Identities = 67/197 (34%), Positives = 94/197 (47%), Gaps = 6/197 (3%)
Frame = +1
Query: 115 FVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAK---GGDRITR-- 279
F P+PIQ+ T P L G+D+ + +P + +L K K GG +
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 280 VLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLI 459
LVL PTREL Q+ V R+ + Q S +R DIVI TPGRL
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 460 DHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKD 639
D I + L + +VLDEADRMLD F E ++ I+ + RQ ++FSAT +V
Sbjct: 254 DLIESNV-LRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHK 312
Query: 640 LAAVSL-KKPVKLFVNS 687
LA + P+K+ + S
Sbjct: 313 LAQEFMDPNPIKVIIGS 329
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 91.5 bits (217), Expect = 7e-19
Identities = 66/214 (30%), Positives = 97/214 (45%), Gaps = 1/214 (0%)
Frame = +1
Query: 43 YDENA-SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXY 219
YDE SF M L L++ I + F P+ IQ I G DV +
Sbjct: 36 YDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
Query: 220 MLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKY 399
+L++L + LVL PTREL Q+ V R L + V+
Sbjct: 96 CSGVLQQLDISLVQ----CQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVRE 151
Query: 400 QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQ 579
+ VL+ +V+ TPGR+ D +R S +I++ VLDEAD ML F +Q+ +I +
Sbjct: 152 DQRVLQSGVHVVVGTPGRVFDLLRRQ-SLRADAIKMFVLDEADEMLSRGFKDQIYDIFQL 210
Query: 580 CSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
K Q +FSATM E ++ + KPV++ V
Sbjct: 211 LPSKVQVGVFSATMPPEALEITRKFMNKPVRILV 244
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 89.8 bits (213), Expect = 2e-18
Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 8/207 (3%)
Frame = +1
Query: 76 LSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLY-- 249
+S PL + + + PIQA+T + L G D+ ++LPILE L+
Sbjct: 103 ISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
Query: 250 -KAK---GGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
K+K G R VLVL+PTREL QV A QE L+
Sbjct: 163 AKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLK 222
Query: 418 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC--SPK 591
+ DIV+ TPGR+ DHI + ++ VLDEAD ML F E ++ I+ + S K
Sbjct: 223 RGVDIVVGTPGRIKDHIER-QNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTK 281
Query: 592 RQTMLFSATMSEEVKDLAAVSLKKPVK 672
QT+LFSAT+ VK+++ LK+ K
Sbjct: 282 VQTLLFSATLPSWVKNISNRFLKRDQK 308
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 85.8 bits (203), Expect = 3e-17
Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 4/218 (1%)
Frame = +1
Query: 34 PPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXX 213
PPP +F + L L+ + + + PTPIQ IP AL GK +
Sbjct: 106 PPPV---LTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTA 162
Query: 214 XYMLPILERLL--YKAKGGD--RITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXX 381
+++PI+ R + D R +VL PTREL QV + L +
Sbjct: 163 SFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVG 222
Query: 382 XXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQM 561
+ Q ++Q +++I TPGR++D + + + L +I VLDE D ML F +Q+
Sbjct: 223 GDPMSGQLYRIQQGVELIIGTPGRVVD-LLSKHTIELDNIMTFVLDEVDCMLQRGFRDQV 281
Query: 562 KEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKL 675
+I + S + Q +LFSAT+S EV+ + SL K + L
Sbjct: 282 MQIFQALS-QPQVLLFSATISREVEKVGG-SLAKEIIL 317
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 84.6 bits (200), Expect = 8e-17
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 13/208 (6%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + LS +M A+ LN PT IQ IP + K V Y+LPI++
Sbjct: 113 NFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ 172
Query: 238 RLLYKA-----KGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQ 402
+ K R R +VL PTREL QV+ V + ++ ++ Q
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232
Query: 403 ESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQC 582
E L D+V+ TPGR++ HI + I LVLDEAD M D F ++++ +
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEE-GNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPL 291
Query: 583 SPKR--------QTMLFSATMSEEVKDL 642
+ + QT+L +ATM+ V+ L
Sbjct: 292 NQRALKTNDQGFQTVLVTATMTMAVQKL 319
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 83.4 bits (197), Expect = 2e-16
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 3/214 (1%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
++ F + L L++AI F HP+ +Q IP A+LG DV ++L
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 232 LERLLYKAKGGDRITRVLVLVPTRELGAQV-HAVTRQLAQFXXXXXXXXXXXXDVKYQES 408
L+++ + G LVL TREL Q+ + R ++K +
Sbjct: 105 LQQI--EPSPGQ--VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKD 160
Query: 409 VLRQN-PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQC 582
+L+ P IV+ TPGR++ R L ++ +LDE D+ML+ ++EI +
Sbjct: 161 LLKNECPHIVVGTPGRVLALARE-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 219
Query: 583 SPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
+Q M+FSAT+S+E++ + ++ P++++V+
Sbjct: 220 PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 83.4 bits (197), Expect = 2e-16
Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 3/214 (1%)
Frame = +1
Query: 52 NASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPI 231
++ F + L L++AI F HP+ +Q IP A+LG DV ++L
Sbjct: 45 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLST 104
Query: 232 LERLLYKAKGGDRITRVLVLVPTRELGAQV-HAVTRQLAQFXXXXXXXXXXXXDVKYQES 408
L+++ + G LVL TREL Q+ + R ++K +
Sbjct: 105 LQQI--EPSPGQ--VSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKD 160
Query: 409 VLRQN-PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQC 582
+L+ P IV+ TPGR++ R L ++ +LDE D+ML+ ++EI +
Sbjct: 161 LLKNECPHIVVGTPGRVLALARE-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 219
Query: 583 SPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
+Q M+FSAT+S+E++ + ++ P++++V+
Sbjct: 220 PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 253
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 81.8 bits (193), Expect = 6e-16
Identities = 68/231 (29%), Positives = 106/231 (45%), Gaps = 21/231 (9%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPIL- 234
S+ L+ L+KA+ + P+PIQ A IP+ L +DV ++LP+L
Sbjct: 314 SWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLA 373
Query: 235 --ERLLYKAKGGDRI-TRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQE 405
RL ++ + +V+ PTREL Q+ T + A + ++ Q
Sbjct: 374 YISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQG 433
Query: 406 SVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEII---- 573
+ Q +IVIATPGRLID + + L+ +VLDEADRM+D F Q+ ++
Sbjct: 434 LKITQGCEIVIATPGRLIDCLERRYAV-LNQCNYVVLDEADRMIDMGFEPQVAGVLDAMP 492
Query: 574 -RQCSPK------------RQTMLFSATMSEEVKDLAAVSLKKPVKLFVNS 687
P+ R T +FSATM V+ LA L+ PV + + +
Sbjct: 493 SSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT 543
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 81.4 bits (192), Expect = 7e-16
Identities = 56/223 (25%), Positives = 93/223 (41%)
Frame = +1
Query: 13 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 192
D FE + SF +M + +++ + F P+ IQ + L G+DV
Sbjct: 21 DKLVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQ 80
Query: 193 XXXXXXXXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXX 372
L + + + R + L+L PTREL Q + +
Sbjct: 81 SGTGKTSMIALSVCQVV----DTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHA 136
Query: 373 XXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFA 552
V L +V TPGR+ D I+ S +I++L+LDE+D ML F
Sbjct: 137 CIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRR-SLRTRAIKLLILDESDEMLSRGFK 195
Query: 553 EQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
+Q+ ++ R P Q L SAT+ E+ ++ + + +PVK+ V
Sbjct: 196 DQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILV 238
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 81.0 bits (191), Expect = 1e-15
Identities = 68/201 (33%), Positives = 94/201 (46%), Gaps = 19/201 (9%)
Frame = +1
Query: 28 EEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALL-GKDVXXXXXXXXX 204
EE PP E +++ +M L LMK+I L+F PT IQ A +A GKDV
Sbjct: 183 EEIPP--EFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSG 240
Query: 205 XXXXYMLPILERLL---------YKAKG-------GDRITRVLVLVPTRELGAQVHAVTR 336
+ LPIL+RLL Y KG D R L++ PTREL QV
Sbjct: 241 KTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLE 300
Query: 337 QLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLIDHIR--NTPSFGLHSIEVL 510
A+ + QE L++ P+IV+ATPGRL + + LHS+
Sbjct: 301 NAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFF 360
Query: 511 VLDEADRMLDEYFAEQMKEII 573
VLDEADRM++ +++ I+
Sbjct: 361 VLDEADRMVERGHFRELQSIL 381
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 76.2 bits (179), Expect = 3e-14
Identities = 59/228 (25%), Positives = 98/228 (42%), Gaps = 7/228 (3%)
Frame = +1
Query: 13 DSDFFEEPPPYDENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXX 192
D + EE + SF + L L++A+ PT IQ + IP L GKDV
Sbjct: 32 DREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91
Query: 193 XXXXXXXXYMLPILERLLYKAKGGDR--ITRVLVLVPTRELGAQVHAVTRQLAQFXXXXX 366
Y+LP+L++L + +LVP+REL QV+ L +
Sbjct: 92 TGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQL 151
Query: 367 XXXXXXXDVKYQE--SVLRQNPDIVIATPGRLIDHIRN---TPSFGLHSIEVLVLDEADR 531
+ + + L P+I+++TP + P+ S+ +LVLDEAD
Sbjct: 152 KAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADL 211
Query: 532 MLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKL 675
+L + + ++ + + Q +L SAT S +V+ L + L P+ L
Sbjct: 212 LLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVL 259
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 75.4 bits (177), Expect = 5e-14
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 2/218 (0%)
Frame = +1
Query: 34 PPPYDENASFYNM-NLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXX 210
PPP A + +++ + L F PTPIQ IPI L G++
Sbjct: 133 PPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKT 192
Query: 211 XXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXD 390
++ P+L +L K D I R ++L P REL AQ ++L +
Sbjct: 193 FAFICPMLIKL--KRPSTDGI-RAVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLV 249
Query: 391 VKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEI 570
S L D++I+TP RL I+ L +E LVLDE+D++ ++ +Q+ +
Sbjct: 250 KTADFSKLWC--DVLISTPMRLKRAIK-AKKIDLSKVEYLVLDESDKLFEQSLLKQIDCV 306
Query: 571 IRQCS-PKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
++ CS P LFSAT+ + V++LA + V++ +
Sbjct: 307 VKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVII 344
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 74.5 bits (175), Expect = 9e-14
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Frame = +1
Query: 40 PYDENASFYNMNLSRPLMKAIG-SLNFVHPTPIQAATIPIALLG--KDVXXXXXXXXXXX 210
PY + F ++NLS LMK + + F P+ IQA ++P+ + K +
Sbjct: 86 PYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKT 145
Query: 211 XXYMLPILERLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXD 390
++L +L R+ R + L + PTREL Q V +++ +F
Sbjct: 146 TCFVLGMLSRVDPTL----REPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPD-S 200
Query: 391 VKYQESVLRQNP---DIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRML--DEYFAE 555
+ + R P +VI TPG L + GL+ +++LV DEAD ML D + +
Sbjct: 201 TRGAPAATRGAPVSAHVVIGTPGTLKKWMA-FKRLGLNHLKILVFDEADHMLATDGFRDD 259
Query: 556 QMKEI--IRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKLFV 681
+K + I + +P Q +LFSAT +E VKD A ++K P +LFV
Sbjct: 260 SLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFV 303
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 74.1 bits (174), Expect = 1e-13
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 7/199 (3%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
+F + S +MKA+ NF P IQA + GK Y++P+++
Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQ 434
Query: 238 RLLYK-----AKGGDRITRVLVLVPTRELGAQVHAVTRQLAQF-XXXXXXXXXXXXDVKY 399
RL + +K RV+VLVPT EL +QV A R +++ +
Sbjct: 435 RLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRT 494
Query: 400 QESVLRQNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRML-DEYFAEQMKEIIR 576
Q L Q D++IATPGR ++ N GL ++ +LDE D + D+ F ++ +I
Sbjct: 495 QLENLEQGVDVLIATPGR-FTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNLIN 553
Query: 577 QCSPKRQTMLFSATMSEEV 633
Q + +AT+ E+
Sbjct: 554 SSPVTAQYLFVTATLPLEI 572
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 71.3 bits (167), Expect = 8e-13
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 4/180 (2%)
Frame = +1
Query: 148 IPIALLGKDVXXXXXXXXXXXXXYMLPILERLL--YKAKGGD--RITRVLVLVPTRELGA 315
IP AL GK + +++PI+ R + D R +VL PTREL
Sbjct: 4 IPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCV 63
Query: 316 QVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQNPDIVIATPGRLIDHIRNTPSFGLH 495
QV + L + + Q ++Q +++I TPGR++D + + + L
Sbjct: 64 QVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD-LLSKHTIELD 122
Query: 496 SIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQTMLFSATMSEEVKDLAAVSLKKPVKL 675
+I VLDE D ML F +Q+ +I + S + Q +LFSAT+S EV+ + SL K + L
Sbjct: 123 NIMTFVLDEVDCMLQRGFRDQVMQIFQALS-QPQVLLFSATISREVEKVGG-SLAKEIIL 180
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 68.1 bits (159), Expect = 7e-12
Identities = 48/208 (23%), Positives = 91/208 (43%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
SF +M ++ +++ + + P+ IQ + L G+DV + + +
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82
Query: 238 RLLYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLR 417
+ + R +VLVL P+REL +Q + + + L
Sbjct: 83 IVNISS----RKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLE 138
Query: 418 QNPDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMKEIIRQCSPKRQ 597
+ V TPGR+ D I+ S ++++LVLDE+D ML + +Q+ ++ R Q
Sbjct: 139 RGVHAVSGTPGRVYDMIKRG-SLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQ 197
Query: 598 TMLFSATMSEEVKDLAAVSLKKPVKLFV 681
L SAT+ +E+ ++ + PV++ V
Sbjct: 198 VCLISATLPQEILEMTEKFMTDPVRILV 225
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 68.1 bits (159), Expect = 7e-12
Identities = 67/234 (28%), Positives = 98/234 (41%), Gaps = 25/234 (10%)
Frame = +1
Query: 58 SFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILE 237
SF + L L+ ++ F PT +Q+A +P + G D Y+LPIL
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILS 170
Query: 238 R---LLYKAKG----GDRITRV--LVLVPTRELGAQ-VHAVTRQLAQFXXXXXXXXXXXX 387
L K++ D+ T + +++ P+RELG Q V V + L
Sbjct: 171 EIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGA 230
Query: 388 DVKYQESVLRQN-PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQMK 564
+ QE L++N P IV+ TPGR+ + I H LVLDE D +L F E +
Sbjct: 231 NRMRQEEALKKNKPAIVVGTPGRIAE-ISKGGKLHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 565 EIIRQ------CSPK--------RQTMLFSATMSEEVKDLAAVSLKKPVKLFVN 684
I+ PK RQT+L SAT+ V A +PV + N
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQAN 343
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 62.9 bits (146), Expect = 3e-10
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Frame = +1
Query: 283 LVLVPTRELGAQV-HAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN-PDIVIATPGRL 456
LVL TREL Q+ + R ++K + +L+ P IV+ TPGR+
Sbjct: 35 LVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRV 94
Query: 457 IDHIRNTPSFGLHSIEVLVLDEADRMLDEY-FAEQMKEIIRQCSPKRQTMLFSATMSEEV 633
+ R L ++ +LDE D+ML+ ++EI + +Q M+FSAT+S+E+
Sbjct: 95 LALAREK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 153
Query: 634 KDLAAVSLKKPVKLFVN 684
+ + ++ P++++V+
Sbjct: 154 RPVCKKFMQDPMEIYVD 170
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 58.4 bits (135), Expect = 6e-09
Identities = 54/192 (28%), Positives = 81/192 (42%), Gaps = 25/192 (13%)
Frame = +1
Query: 76 LSRPLMKAIGSLNFVHPTPIQAA----TIPIALLGKDVXXXXXXXXXXXXXYMLPILERL 243
L+ L KA+ ++ P+Q A TI +D+ Y LPI++ L
Sbjct: 28 LNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL 87
Query: 244 LYKAKGGDRITRVLVLVPTRELGAQVHAVTRQLAQFXXXXXXXXXXXXDVKYQESVLRQN 423
A R R LV++PTR+L QV V +A + + S L +
Sbjct: 88 ---ASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKT 144
Query: 424 P---------------------DIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLD 540
P DI++ATPGRL+DHI NT F L + LV+DE DR+L
Sbjct: 145 PKLDAGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLR 204
Query: 541 EYFAEQMKEIIR 576
E + + +++
Sbjct: 205 EAYQSWLPTVLQ 216
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 52.8 bits (121), Expect = 3e-07
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 10/190 (5%)
Frame = +1
Query: 88 LMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAKGGD 267
++ + + FV PT IQ +P G+D Y+L I L+ +
Sbjct: 87 ILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFS-LINPQRSS- 144
Query: 268 RITRVLVLVPTRELGAQVHAVTRQLA-----QFXXXXXXXXXXXXDVKYQESVLRQNPDI 432
+ +++VPTRELG QV V R LA ++ +S L+ P
Sbjct: 145 --VQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPA 202
Query: 433 VIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ---MKEIIRQCS--PKRQ 597
++ + H+ F + S+ VLV+DE D + Y ++Q +++++ S KRQ
Sbjct: 203 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLF--YSSKQVGSVRKLLTSFSSCDKRQ 260
Query: 598 TMLFSATMSE 627
T+ SA++ +
Sbjct: 261 TVFASASIPQ 270
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 46.4 bits (105), Expect = 3e-05
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 10/186 (5%)
Frame = +1
Query: 46 DENASFYNMNLSRPLMKAIGSLNFVHPTPIQAATIPIALLGKDVXXXXXXXXXXXXXYML 225
D S+ ++ LS + A+ F P+ QA IP L GKDV Y+
Sbjct: 77 DHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLA 136
Query: 226 PILERLLYKAKGGDRITRVLVLVPTRELGAQV-------HAVTRQLAQFXXXXXXXXXXX 384
PI+++L A + R P + + + V R +
Sbjct: 137 PIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRV 196
Query: 385 XDVKYQESVLRQNPDIVIATPGRLIDHI---RNTPSFGLHSIEVLVLDEADRMLDEYFAE 555
V + + PDI+++TP L+++I RN L ++ +V DEAD +L F
Sbjct: 197 EAVCGSQGWPDRLPDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQN 256
Query: 556 QMKEII 573
Q+ +I
Sbjct: 257 QIIRLI 262
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 29.5 bits (63), Expect = 3.2
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +1
Query: 424 PDIVIATPGRLIDHIRNTPSFGLHSIEVLVLDEADRMLDEYFAEQ---MKEIIRQCS--P 588
P I++AT L H+ F + S+ VLV+DE D + Y ++Q +++++ S
Sbjct: 44 PAILVATVASLC-HMLEKHIFRIDSVRVLVVDEVDFLF--YSSKQVGSVRKLLTSFSSCD 100
Query: 589 KRQTMLFSATMSE 627
KRQT+ SA++ +
Sbjct: 101 KRQTVFASASIPQ 113
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 481 RVCSVCDR*ADPASLSLCRGSDAA 410
RVC VC R DP C+ DAA
Sbjct: 201 RVCEVCRRTGDPNKFMFCKRCDAA 224
>At4g34265.2 68417.m04871 expressed protein
Length = 90
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 326 AWT*APSSLVGTSTRTLVIRSPPFALYRRRSSMGSM 219
AW A S V + R +RSPP L R R S S+
Sbjct: 2 AWRSAARSFVSATARAPSLRSPPPTLPRLRPSQSSL 37
>At4g34265.1 68417.m04870 expressed protein
Length = 94
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 326 AWT*APSSLVGTSTRTLVIRSPPFALYRRRSSMGSM 219
AW A S V + R +RSPP L R R S S+
Sbjct: 2 AWRSAARSFVSATARAPSLRSPPPTLPRLRPSQSSL 37
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,837,331
Number of Sequences: 28952
Number of extensions: 401349
Number of successful extensions: 1266
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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