Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K15
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.6  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    27   3.4  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   4.5  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   7.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   7.9  

>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = +2

Query: 545 NDGLPKASIECTQRFLLEGS---VKELATELLHTNVPEIDRIGTIEELMKNFEYQGGRXV 715
           N  +   + E  ++  L G+    K+ AT +  T   E  ++  I  +++N EY GG  V
Sbjct: 700 NFSIQTTTAEILRKLCLHGTQEQAKQAATIIAITETKEF-KLDMITNIVENLEYNGGLPV 758

Query: 716 FXVLLGWL 739
             + LG L
Sbjct: 759 RLMTLGQL 766


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -2

Query: 741 TSQPSSTXKTXLPP*YSKFFINSSIVPIRSISGTFV*SSSVASSLTDPSSRNLCVHS 571
           TS PSST  +      S  F ++S     SIS +   SS++ SS T PS+ +L + S
Sbjct: 584 TSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPT-PSTSSLMISS 639


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +2

Query: 527 ARQTLDNDGLPKASIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKN 688
           +++T  + G P  S E  +  L  G  ++   +LL  +V E D +GT  E++KN
Sbjct: 548 SQETAFDTGAP-ISEEQIEELLNSGLDEQEGEKLLVLHVSEKDPVGTFTEVLKN 600


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 321 QEQRSKEKDALRPVLILSSKKCFEAESFVQYQNINE 428
           +E+R K+K A    +I+S+ K    E+F++Y   N+
Sbjct: 382 EEERKKKKLAKYTEVIISNLKASNIEAFLEYLRSND 417


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 257 WSDMLRQWCKHRKDPIVSSADARAAFQRKG 346
           WS  L ++ KH   P +SS  + ++F + G
Sbjct: 127 WSAKLSRFTKHASKPSLSSNSSDSSFSKSG 156


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = -3

Query: 443 SRCEEFV-DILILDKALRFETFLR*QYQDRPECVLFFGTLLLRLQ-KTL*GP 294
           S+ ++F+ ++ +LD A+  +  +R + +  PE  ++F T+LLR + K+L  P
Sbjct: 258 SQKKQFIRNLALLDMAVGKQRSVRKEKKRNPEESIYFSTILLREETKSLISP 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,350
Number of Sequences: 5004
Number of extensions: 62194
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)