Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K15
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43...    32   0.68 
01_02_0019 + 10262685-10262909,10263014-10263076,10263155-102633...    32   0.68 
06_01_0127 - 977667-978719,978875-979051                               29   3.6  

>06_01_0047 -
           429838-429960,430413-430508,430589-430596,431088-431141,
           431226-431274,431368-431466,431560-431639,431926-431989,
           432082-432255,432342-432965,433046-433189,433262-433372,
           433442-433498,433664-433798
          Length = 605

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 454 PALGPVVKNSLIF*YWTKLSASKHFFDDNIKTGRSASFSLERCSCVCRRHYRVLSMLTPL 275
           P +  +  N L+     KLS SK   DDNIK  RS S  L+    +  +  R +  +  +
Sbjct: 71  PHVNEISTNELLKTLKRKLSKSKRSEDDNIKMKRSESIELDN-DVMINQVLRDIIQMDQI 129

Query: 274 PEHIRPELHLH 242
             +++ +L++H
Sbjct: 130 INNLKKKLNIH 140


>01_02_0019 +
           10262685-10262909,10263014-10263076,10263155-10263316,
           10263407-10263589,10263676-10263806,10264251-10264419,
           10264524-10264653,10265702-10265898
          Length = 419

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +2

Query: 203 RFRLKTTNPESWDM-KMKFWSDMLRQWCKHRKDPIVSSADARAA----FQRKGR-TPACL 364
           RF+  T     W   K+ FW  +L +  +  +   + SA AR      F R G  TP CL
Sbjct: 36  RFKAFTGQRRDWPQPKLLFWKGLLLRVARRLR---LCSAPARLVLGVWFARPGGLTPLCL 92

Query: 365 DIVIEEMFRSGEL 403
             V+EEM   GE+
Sbjct: 93  PQVLEEMRADGEI 105


>06_01_0127 - 977667-978719,978875-979051
          Length = 409

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 738 SQPSSTXKTXLPP*YSKF-FINSSIVPIRS-ISGTFV*SSSVASSLTDPSSRNLCVHSIL 565
           SQ S      +PP  S F FI   + P R+ +  TFV +  ++SS   P+   + + SI+
Sbjct: 214 SQYSRVFSYCVPPSTSSFGFIMFGVPPQRAALVPTFVSTPLLSSSTMSPTFYRVLLRSII 273

Query: 564 ALGKP 550
             G+P
Sbjct: 274 VAGRP 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,346,176
Number of Sequences: 37544
Number of extensions: 408781
Number of successful extensions: 1030
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)