Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K15
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_51209| Best HMM Match : UBX (HMM E-Value=0.5)                       29   6.4  
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    29   6.4  
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_2793| Best HMM Match : UBX (HMM E-Value=0.32)                       29   6.4  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      28   8.5  

>SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +2

Query: 215 KTTNPESWDMKMKFWSDMLRQWCKHRKDPIVSSADARAAFQRKGRTPACLDIVIEEMFRS 394
           +  NP+ WD K+ FW+  + + C+ R +        R  F R G  P  L IV+ EM R+
Sbjct: 68  RNVNPKHWDSKLNFWTTAVCEMCQSRGEFCTDLNTLRQRFTRNGHVPLGLKIVLREMLRT 127

Query: 395 GELCPISKYQRILHNGTEGWVRWT 466
            +L  +   Q  ++   + W+ W+
Sbjct: 128 QKLQTVEDIQSHVN---DDWLSWS 148


>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
 Frame = -1

Query: 322 CVCRRH---YRVLSMLTPLPEHIRPELH-LHVP 236
           CV RRH   +R+L  L+P P+ +R  +H LH+P
Sbjct: 204 CVQRRHEKPFRILQDLSPNPDTVRQTVHTLHIP 236


>SB_51209| Best HMM Match : UBX (HMM E-Value=0.5)
          Length = 272

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 524 PARQTLDNDG--LPKASIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKNFE 694
           P +  L++D     + +I  T   +L    +E  T+ L TN+ EID+   +EE++K ++
Sbjct: 212 PPQMLLEDDEPMTEEEAIALTHYNVLNKKRQEELTKYLKTNIVEIDKDHIVEEILKLYK 270


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 CSCVCRRHYRVLSMLTPLPEHI 263
           CSC C  H  ++SM +PL  H+
Sbjct: 158 CSCRCDSHRLLMSMCSPLSAHV 179


>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 524 PARQTLDNDG--LPKASIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKNFE 694
           P +  L++D     + +I  T   +L    +E  T+ L TN+ EID+   +EE++K ++
Sbjct: 345 PPQMLLEDDEPMTEEEAIALTHYNVLNKKRQEELTKYLKTNIVEIDKDHIVEEILKLYK 403


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 215 KTTNPESWDMKMKFWSDMLRQWCKHRK 295
           K+T P++W  ++K W + +RQ  + +K
Sbjct: 7   KSTRPQTWKCRLKGWQNSMRQSIRVKK 33


>SB_2793| Best HMM Match : UBX (HMM E-Value=0.32)
          Length = 311

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +2

Query: 524 PARQTLDNDG--LPKASIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKNFE 694
           P +  L++D     + +I  T   +L    +E  T+ L TN+ EID+   +EE++K ++
Sbjct: 232 PPQMLLEDDEPMTEEEAIALTHYNVLNKKRQEELTKYLKTNIVEIDKDHIVEEILKLYK 290


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 328 CSCVCRRHYRVLSMLTPLPEHI 263
           CSC C  HY ++SM +P   H+
Sbjct: 591 CSCRCVPHYLLMSMCSPSCAHV 612


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,456,472
Number of Sequences: 59808
Number of extensions: 465915
Number of successful extensions: 1440
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)