Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K15
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    30   2.4  

>Z68338-2|CAA92759.1|  411|Caenorhabditis elegans Hypothetical
           protein T24B8.2 protein.
          Length = 411

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 21/77 (27%), Positives = 42/77 (54%)
 Frame = +2

Query: 224 NPESWDMKMKFWSDMLRQWCKHRKDPIVSSADARAAFQRKGRTPACLDIVIEEMFRSGEL 403
           N   +D K++FW+D +   C   K+   +  + +  F+R  R PA LD++++ + + G++
Sbjct: 28  NKVDYDRKLRFWTDAIYGSCIGEKNATFNLLELKKRFRRNDRVPASLDVILDHLKKKGDV 87

Query: 404 CPISKYQRILHNGTEGW 454
             I ++ R  H+   GW
Sbjct: 88  ITIGEW-RDRHSSWVGW 103


>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 260 SDMLRQWCKHRKDPIVSSADARAAFQRKGR 349
           +D L  WC H   P+V    A  AFQ K +
Sbjct: 413 NDSLYSWCTHTHPPVVERVAAVRAFQAKNK 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,448,786
Number of Sequences: 27780
Number of extensions: 352873
Number of successful extensions: 940
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)