Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K15
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domai...    42   7e-04
At3g13250.1 68416.m01668 hypothetical protein low similarity to ...    31   1.3  
At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG sulfoquinovosylt...    28   9.2  

>At3g62080.1 68416.m06975 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 423

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +2

Query: 203 RFRLKTTNPESWDMKMKFWSDMLRQWCKHRKDPIVSSADARAA-FQRKGRTPACLDIVIE 379
           RF+  +     W++K +FW D++ +  +     I+     + A F R G TP C+D V+ 
Sbjct: 26  RFKAFSGQRSDWELKFQFWRDLIIKVSRQFGLFIIDPVQVKKAWFDRGGMTPLCIDDVVL 85

Query: 380 EMFRSGELCPIS 415
            M   G++  IS
Sbjct: 86  LMHSEGDVVRIS 97


>At3g13250.1 68416.m01668 hypothetical protein low similarity to
           SP|P07271 DNA repair and recombination protein PIF1,
           mitochondrial precursor {Saccharomyces cerevisiae}
          Length = 1419

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 530 RQTLDNDGLPKASIECTQRFLLEGSVKELATELLHTNVPEIDRIGTIEELMKNFEYQGGR 709
           R+ L +D + K  ++C  R+++  + K       H NV   ++ G+I+ L K       R
Sbjct: 545 RRRLTDDYIEKGGVKCDNRYVVPYNKKLSLRYQAHINVEWCNQNGSIKYLFKYINKGPDR 604

Query: 710 XVFXV 724
            VF V
Sbjct: 605 VVFIV 609


>At5g01220.1 68418.m00027 UDP-sulfoquinovose:DAG
           sulfoquinovosyltransferase / sulfolipid synthase (SQD2)
           identical to GI:20302857
          Length = 510

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 681 INSSIVPIRSISGTFV*SSSVASSLTDPSSRNLCVHSILALG 556
           IN SI P    S T   SSS A+S + P S +  +HS L+ G
Sbjct: 7   INLSIPPHLLPSTTNTCSSSSATSCSPPRSSSFVLHSPLSFG 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,446,235
Number of Sequences: 28952
Number of extensions: 328893
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)