Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K10
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    48   9e-08
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    46   3e-07
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    46   5e-07
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    44   2e-06
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    44   2e-06
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    42   6e-06
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.33 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    24   1.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   7.0  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 48.0 bits (109), Expect = 9e-08
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
 Frame = +3

Query: 174 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 350
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 351 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 527
            +LW+PDV++ N+A     G +     V +NGS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
 Frame = +3

Query: 174 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 350
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 351 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 527
            +LW+PDV++ N+A     G +     V +NGS  ++      +   + +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
 Frame = +3

Query: 174 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 350
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 351 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 527
            +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 447 VSWIKRLDISTPISMQLDNWPNDMQTC 527
             ++      +   M +  +P D Q C
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHC 142


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 273 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 446
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 447 VSWIKRLDISTPISMQLDNWPNDMQTC 527
             ++      +   M +  +P D Q C
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHC 142


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 41.9 bits (94), Expect = 6e-06
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
 Frame = +3

Query: 144 IDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDKRLSWN 311
           +DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W D RL++ 
Sbjct: 45  LDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYG 104

Query: 312 AGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSVSWIKR 464
               G  T  V SE    +W PD   +N        ATT+ ++    RV ++GS++   R
Sbjct: 105 KRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSITRSIR 160

Query: 465 LDISTPISMQLDNWPNDMQTCTFQV 539
           L I+    M L   P D Q C  ++
Sbjct: 161 LTITASCPMNLQYLPMDRQLCHIEI 185


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 414 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 515
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 138 RDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTT 34
           +DS  AF+      +AQV    N  N + R   TT
Sbjct: 94  KDSSEAFNEFRTKILAQVHGTNNGTNKNMRRLSTT 128


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 123 QHHCPSXIDSLLATYDRESPPD 188
           Q  CP   +++ AT+ R + PD
Sbjct: 169 QFECPKVNETVAATHPRYADPD 190


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 461 LYPG-DGAVIRYTGAESVVPGGGC 393
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,036
Number of Sequences: 336
Number of extensions: 3668
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)