Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K08
         (851 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   3.9  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   3.9  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   6.7  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   6.7  
AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    23   8.9  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/52 (19%), Positives = 26/52 (50%)
 Frame = +1

Query: 4   WRKRELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 159
           W   E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 209 WDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 260


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 10/52 (19%), Positives = 26/52 (50%)
 Frame = +1

Query: 4   WRKRELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 159
           W   E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 209 WDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 260


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/52 (19%), Positives = 26/52 (50%)
 Frame = +1

Query: 4   WRKRELPG*SCQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 159
           W   E+P    +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 205 WDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 256


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 716  FGHLVH-ALGRTAGGAXLSSAGLCLNASKA 802
            +  L+H A+G   GG  LS  G CL   +A
Sbjct: 936  YSFLMHTAVGHGGGGQSLSGPGSCLEDFRA 965


>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +2

Query: 719 GHLVHALGRT-AGGAXLSSAGL 781
           GHL H  G+T  G    S AGL
Sbjct: 385 GHLAHVTGKTDVGNVVKSDAGL 406


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 888,383
Number of Sequences: 2352
Number of extensions: 17009
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90545769
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)