Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K06
         (1208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 23  GXXXGGXGGRXGGXXGWGXXXXXEXGGGXG 112
           G   GG GG  GG  G+G       GGG G
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRG 41


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 111 PSPPPXSXXXXXPXPXXPPXLPP 43
           P PPP S     P P   P LPP
Sbjct: 419 PPPPPISSSSTTPRPDDKPSLPP 441


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
 Frame = -3

Query: 111 PSPPPXSXXXXXPXPXXPPXL----PPXPPXXXP 22
           P PPP       P P  PP +    PP PP   P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,535
Number of Sequences: 5004
Number of extensions: 18823
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)