Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K03
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     32   0.67 
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376...    31   1.5  
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    30   2.0  
09_02_0226 - 6007656-6008063,6012166-6012678                           29   4.7  
01_01_0341 - 2734509-2735522                                           29   4.7  
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277...    29   6.2  
06_03_0743 + 24069752-24070483,24071890-24072345                       28   8.2  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.2  
02_01_0054 - 404464-405152,406087-406618                               28   8.2  

>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 756 GGXVAGXQGXPRRAEQEHXGEHGAGRQXVC 667
           GG VA  +G  RR   E  GEHGAGR+ +C
Sbjct: 746 GGRVAVVRGGGRREHLE--GEHGAGREVLC 773


>05_06_0271 +
           26836396-26836610,26836793-26836872,26837573-26837641,
           26837694-26837985,26838303-26838399,26838478-26838744,
           26838832-26838909,26839019-26839120,26839251-26839300,
           26839383-26839482,26839645-26839743,26839840-26839968,
           26840319-26840427,26840652-26841055,26841140-26841280,
           26841373-26841393
          Length = 750

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 432 NWSANVQALYPGDGAVIRYTGAESSTTSGLHKRSEDTSQVLQPHSPCVPTQSFVDPI 262
           N+   +  +   DG +IRY G +  T  G    +E  S+V    SP        +P+
Sbjct: 458 NYGRQIVTISSTDGKIIRYAGPQYPTRKGSDGSAESGSEVEDGASPMASRNLITNPL 514


>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/80 (28%), Positives = 30/80 (37%)
 Frame = +3

Query: 84  CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 263
           CG        V H  L    V   LP R     +   A   C  + +R HR ++ RS   
Sbjct: 20  CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79

Query: 264 LDRQTTELERRXSGAAALGW 323
             R++  L RR      LGW
Sbjct: 80  CRRRSPRLWRRSGSGFLLGW 99


>09_02_0226 - 6007656-6008063,6012166-6012678
          Length = 306

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 373 GRGEQYHVRPPQAFRGHQPSAAAPLXLRSNSVVCRSN 263
           G G QY  R P++ RG QP+A   L     +  CR+N
Sbjct: 176 GHGSQYR-RGPESLRGTQPAAMLRLPCFCCAAGCRNN 211


>01_01_0341 - 2734509-2735522
          Length = 337

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 446 SNCIEIGVLMSKRFIQETEPLLDTRARR-AVPR-QASTSVP 330
           S+C ++G +    F    E L D RARR AVPR +A+ S P
Sbjct: 251 SHCKKVGHISDDCFYLHPEKLADYRARRAAVPRPRATASAP 291


>02_05_0822 +
           32025992-32026696,32027237-32027314,32027547-32027713,
           32027811-32027885,32028624-32028742,32028908-32029204,
           32029275-32029362,32029467-32029572,32029727-32029837,
           32030520-32030683,32031237-32031357,32031958-32032182,
           32032267-32032457,32032658-32032825,32032911-32033016,
           32033301-32033438,32033533-32033697,32033777-32033980,
           32034341-32034535,32034603-32034674,32034797-32034949
          Length = 1215

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 379 IHGRGEQYHVRPPQAFR-GHQPSAAAPLXLRSNSVVCRSNSFED 251
           + G G    + PP+ FR GH P AAAP     +  V   +  E+
Sbjct: 21  VRGAGGGLGMPPPEKFRSGHLPRAAAPPLRTDDGSVASGSDMEE 64


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 373 GRGEQYHVRPPQAFRGHQPSAAAPLXLRSNSVVCRSN 263
           G G QY  + P++ RG QP+A   L     +  CR+N
Sbjct: 249 GHGSQYR-KGPESLRGTQPTAMLRLPCYCCAAGCRNN 284


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 57  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 197
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
 Frame = -3

Query: 330 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 172
           E  S  + P    V +  +VDP  L       K  +YS G L L  ++ S   G    D 
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319

Query: 171 GVGGGVPIVRCEERVDHEG 115
           G GGG    R   RV  EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,297,062
Number of Sequences: 37544
Number of extensions: 470851
Number of successful extensions: 1361
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)