Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K03
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    31   1.3  
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    28   9.1  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   9.1  
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ...    28   9.1  
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit...    28   9.1  
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit...    28   9.1  

>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/58 (22%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 203 LKCRVRLTTILESGGESRSYVARSESIM-RDSDVAFSHSAALAIAQVRRNGNKNNISR 33
           + C++ +   LE+    +S ++R   ++  +SD +F  S A+ + +   NG+K ++ +
Sbjct: 126 IPCQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDK 183


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 228 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 115
           LGL N S S   G    D G+GGG P +  +     EG
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 135 PRNVRSGLPPRLQNRSQPDPA 197
           PR+  +  PPRL NR+ P PA
Sbjct: 75  PRSPSTSTPPRLGNRNPPPPA 95


>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 597

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 346 PPQAFRGHQPSAAAPLXLRSNSVVCRSNSFEDLPV 242
           PP  F      AAA +  RS++   RS SF+  PV
Sbjct: 457 PPHGFESSAAMAAAVMNARSSAFAKRSLSFKPAPV 491


>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/98 (21%), Positives = 40/98 (40%)
 Frame = -3

Query: 420 NVQALYPGDGAVIRYTGAESSTTSGLHKRSEDTSQVLQPHSPCVPTQSFVDPIHLKICLY 241
           N + L    G +   T     T SG+  +   T Q++ P    V +Q     +  +I + 
Sbjct: 466 NSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIP 525

Query: 240 SHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERV 127
             G  G+    + ++   V++      G+P ++  ERV
Sbjct: 526 FVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERV 563


>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/98 (21%), Positives = 40/98 (40%)
 Frame = -3

Query: 420 NVQALYPGDGAVIRYTGAESSTTSGLHKRSEDTSQVLQPHSPCVPTQSFVDPIHLKICLY 241
           N + L    G +   T     T SG+  +   T Q++ P    V +Q     +  +I + 
Sbjct: 466 NSEKLAKTIGRLAEKTPDVGDTVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRITIP 525

Query: 240 SHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERV 127
             G  G+    + ++   V++      G+P ++  ERV
Sbjct: 526 FVGAFGVIKHRLEKIFESVEFSTDEESGLPALKVHERV 563


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,388
Number of Sequences: 28952
Number of extensions: 332395
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)