Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_K02
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   209   2e-54
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   200   9e-52
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   200   9e-52
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    35   0.060
At1g29195.1 68414.m03572 expressed protein                             30   1.7  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  209 bits (511), Expect = 2e-54
 Identities = 90/121 (74%), Positives = 108/121 (89%)
 Frame = +3

Query: 33  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
           MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60

Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
           ++PGSK++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120

Query: 393 N 395
           N
Sbjct: 121 N 121



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
 Frame = +3

Query: 582 QDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQLNGGTIEDKVKW 758
           + E G+K I+   +KM +YCSV+RV+AHTQ++ +K  +QKKAH+ EIQ+NGG I  KV +
Sbjct: 138 ETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDY 197

Query: 759 AXXHLEKPIP 788
           A    EK +P
Sbjct: 198 ACSLFEKQVP 207


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  200 bits (488), Expect = 9e-52
 Identities = 88/121 (72%), Positives = 104/121 (85%)
 Frame = +3

Query: 33  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
           MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60

Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
           ++PGSK++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120

Query: 393 N 395
           N
Sbjct: 121 N 121



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
 Frame = +3

Query: 579 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 755
           +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV 
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVD 196

Query: 756 WAXXHLEKPIP 788
           +A    EK IP
Sbjct: 197 FAYSFFEKQIP 207


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  200 bits (488), Expect = 9e-52
 Identities = 88/121 (72%), Positives = 104/121 (85%)
 Frame = +3

Query: 33  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 212
           MSHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE 
Sbjct: 1   MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60

Query: 213 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 392
           ++PGSK++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61  EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120

Query: 393 N 395
           N
Sbjct: 121 N 121



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
 Frame = +3

Query: 579 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQ-RQKKAHIMEIQLNGGTIEDKVK 755
           +  E G+K I+   +KM +Y +V+RV+AHTQ++ +K  +QKKAH+MEIQ+NGGTI  KV 
Sbjct: 137 YDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVD 196

Query: 756 WAXXHLEKPIP 788
           +A    EK IP
Sbjct: 197 FAYSFFEKQIP 207


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 35.1 bits (77), Expect = 0.060
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = -2

Query: 422 KLSSFERRAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDL 243
           K SS +    F   T T  R+   P     A ++    ++N + T+ +  L  G++L+ L
Sbjct: 36  KFSSIKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGL 93

Query: 242 FLVDF*TGTVRFSNHVGHTGLITD 171
           FL+ F       + H G+  ++ D
Sbjct: 94  FLLSFSPTLAEIAAHAGYDYVVVD 117


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 159 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 281
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,787
Number of Sequences: 28952
Number of extensions: 395834
Number of successful extensions: 929
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)