Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_K01
(839 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 41 0.001
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 39 0.004
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07) 38 0.008
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022) 38 0.008
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 38 0.008
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 38 0.013
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.013
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 37 0.023
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06) 35 0.071
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.094
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 35 0.094
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.17
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 0.88
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 1.2
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 1.2
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10) 30 2.0
SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15) 29 3.6
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 3.6
SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07) 29 3.6
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 4.7
SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 29 6.2
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 6.2
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 29 6.2
SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08) 29 6.2
SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 8.2
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +1
Query: 319 GCSTWLVSSERLWRPDVVLLNAAATTAGD--YALRAR--VSNNGSVSWIKRLDISTPISM 486
G S + ++LW+PD+ L N A ++A Y +A+ VS+ G W+ ++T +
Sbjct: 133 GISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGLNMWLAPTILTTSCKI 192
Query: 487 QLDNWPNDMQTCTFQ 531
+ +P D Q+CT +
Sbjct: 193 NVKYFPFDQQSCTLK 207
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = +1
Query: 337 VSSERLWRPDVVLLNAAATTAGDYALRARVSNN------GSVSWIKRLDISTPISMQLDN 498
++ +R+W+PDV+L N A+T +L ++ N GS +W+ I + + +
Sbjct: 108 IAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHDGSTTWLAPAIIKSECKIDVRF 167
Query: 499 WPNDMQTC 522
+P D+Q+C
Sbjct: 168 FPFDVQSC 175
>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
Length = 240
Score = 38.3 bits (85), Expect = 0.008
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = +1
Query: 346 ERLWRPDVVLLNAAATT---AGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPN 507
+ +W PD+ LLN T AG ++ V N G W + + SM L WP
Sbjct: 149 KEIWVPDISLLNNGDNTVKMAGGRSIFLTNVVVENTGKCVWSGPVTFTFTCSMALSRWPF 208
Query: 508 DMQTCTFQ 531
D QTC +
Sbjct: 209 DQQTCAMK 216
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +1
Query: 319 GCSTWLVSSERLWRPDVVLLNAA-ATTAGD---YALRARVSNNGSVSWIKRLDISTPISM 486
G + V +W PD+VL N + ++G+ + + + ++G+V W+ + + + +
Sbjct: 233 GMKSIKVDPSCVWVPDIVLYNNVDSDSSGEMYKFTTKVNIHSDGTVQWLSPIQVKSECKI 292
Query: 487 QLDNWPNDMQTCTFQ 531
+ N+P D Q C +
Sbjct: 293 DITNFPLDEQFCKLE 307
>SB_53336| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.022)
Length = 91
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +1
Query: 346 ERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 525
+++W+PD + N ++T + + G V + +R+ + M L N+P D Q+C+
Sbjct: 26 KQIWKPDTYINNEKSSTVPENQFLLTIDPEGRVVYSQRMTVVASCMMYLRNYPMDTQSCS 85
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 319 GCSTWLVSSERLWRPDVVLLNAAATTAG--DYALRARVSNNGSVSWIKRLDISTPISMQL 492
G + S+ +W PD+ +LN+A + +R +++ G V W+ L + T M +
Sbjct: 61 GIKQMTLRSKLIWTPDISVLNSANKDMDLREKNIRLFINSAGEVLWMNPLILHTSCGMDI 120
Query: 493 DNWPNDMQTCTFQVRF 540
++P D Q C ++RF
Sbjct: 121 AHFPFDNQAC--ELRF 134
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 37.5 bits (83), Expect = 0.013
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +1
Query: 337 VSSERLWRPDVVLLNAA-ATTAG---DYALRARVSNNGSVSWIKRLDISTPISMQLDNWP 504
VS ++W PD+VL N A A+T G ++ R VS++G W+ + S+ ++++ +P
Sbjct: 60 VSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKNMWLAPVIFSSSCTIKIKYFP 119
Query: 505 NDMQTCTFQ 531
D Q C+ +
Sbjct: 120 FDDQYCSLK 128
>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +1
Query: 346 ERLWRPDVVLLNAAATTAG--DYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPND 510
+++W+PD L N AG D +L RV NG+V++ R+ + M+ N+P D
Sbjct: 135 DKIWKPDTYLENVKKIDAGSDDKSLVHKGFRVYPNGNVTFSTRISATLSCKMEFRNFPMD 194
Query: 511 MQTC 522
Q+C
Sbjct: 195 RQSC 198
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 36.7 bits (81), Expect = 0.023
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Frame = +1
Query: 337 VSSERLWRPDVVLLNAAATTAGDYALRARV------SNNGSVSWIKRLDISTPISMQLDN 498
V +W+PD++L N A+T +L ++ S++GS +W+ I T + +
Sbjct: 50 VEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVILSSDGSAAWLSPAIIKTECKVDVRL 109
Query: 499 WPNDMQTC 522
+P D+Q C
Sbjct: 110 FPFDVQYC 117
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 35.9 bits (79), Expect = 0.041
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = +1
Query: 307 QGEWGCSTWLVSSER--LWRPDVVLLNAAATTAGDYALR----ARVSNNGSVSWIKRLDI 468
Q ++G +V ER +W PDVVLLN A ++ + V +NG V W+ + +
Sbjct: 52 QSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNEGNPVLVESNGVVRWLAPVVL 111
Query: 469 STPISMQLDNWPNDMQTC 522
+ M + ++P D Q C
Sbjct: 112 KSRCKMDVRSYPFDEQYC 129
>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
Length = 147
Score = 35.1 bits (77), Expect = 0.071
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +1
Query: 340 SSERLWRPDVVLLNAAATT---AGD---YALRARVSNNGSVSWIKRLDISTPISMQLDNW 501
S + +W PDV L+N A + AG + V G V W+ ++ +++ W
Sbjct: 23 SPQEIWVPDVALINNADKSVRLAGGPELFKTDLNVWQGGKVEWVAPASFTSDCKLRVRYW 82
Query: 502 PNDMQTCT 525
P D Q CT
Sbjct: 83 PIDDQFCT 90
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 34.7 bits (76), Expect = 0.094
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = +1
Query: 340 SSERLWRPDVVLLNAA---ATTAGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNW 501
S + +W PDV L+N AG L V +G V WI + ++ ++++ W
Sbjct: 424 SPKEIWVPDVSLINNGDKLVHVAGGAELFNADTVVRQSGKVDWIAQASFTSTCNLRVRFW 483
Query: 502 PNDMQTCT 525
P D Q CT
Sbjct: 484 PMDDQFCT 491
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 34.7 bits (76), Expect = 0.094
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 319 GCSTWLVSSERLWRPDVVLLNAAATTAGD----YALRARVSNNGSVSWIKRLDISTPISM 486
G T + ++ +W PD+VL ++A + Y +S +GS +W + +
Sbjct: 63 GVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKTHVIISKDGSSAWFSPASFRSTCKI 122
Query: 487 QLDNWPNDMQTC 522
+ +P D QTC
Sbjct: 123 DVTYFPFDEQTC 134
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = +1
Query: 319 GCSTWLVSSERLWRPDVVLLN--AAATTAGDYAL--RARVSNNGSVSWIKRLDISTPISM 486
G ++ V+ +W+PD+VL + T Y RA + +NG W +I + ++
Sbjct: 82 GLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMHNGYTEWFAPTEIHSICAI 141
Query: 487 QLDNWPNDMQTC 522
+ +P D Q C
Sbjct: 142 DITYFPFDEQFC 153
>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 33.1 bits (72), Expect = 0.29
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 349 RLWRPDVVLLNA--AATTAGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQ 516
++WRPD NA ++ TA D + + ++ NG V + + I+ M+L ++P D Q
Sbjct: 34 KMWRPDPFCYNARESSLTASDDDINSMMTIHPNGDVVYSRMTIITAECEMKLHDFPMDEQ 93
Query: 517 TC 522
C
Sbjct: 94 QC 95
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 31.5 bits (68), Expect = 0.88
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 349 RLWRPDVVLL-NAAATTAG---DYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 516
++W PD++L NA T AG Y S++G+ W ++ ++ + +P D Q
Sbjct: 153 KVWIPDIILYNNADETYAGGLEKYKTSVIASSDGTQEWNSPASFTSTCNINVRYFPFDSQ 212
Query: 517 TCTFQ 531
C+ +
Sbjct: 213 NCSLK 217
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 352 LWRPDVVLLNAAAT----TAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQT 519
LW+PD+ L N A + + + + +V+ +G+ +W+ +T + + +P D Q
Sbjct: 73 LWKPDIYLYNNADSGYDGSLYGFTAKIKVNYSGTNTWLAPKIFTTSCKINVKYFPFDQQE 132
Query: 520 C 522
C
Sbjct: 133 C 133
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +1
Query: 352 LWRPDVVLLNAA--ATTAGDYALRARVS--NNGSVSWIKRLDISTPISMQLDNWPNDMQT 519
LW+PD+VL N Y +V + G + W + T + + +P D QT
Sbjct: 116 LWKPDMVLYNNVNDEDRGEQYLFNTKVIIYSTGDIEWYSPNILKTHCKIDIQYFPFDTQT 175
Query: 520 C 522
C
Sbjct: 176 C 176
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 349 RLWRPDVVLL-NAAATTAG---DYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 516
R+WRPD++L NA T G + + ++ +GS W+ + + + +P D Q
Sbjct: 103 RVWRPDLILYNNADRDTDGALDRFYTKVQLKFDGSSLWLAPIIFKSTCKFDVAYFPFDEQ 162
Query: 517 TC 522
+C
Sbjct: 163 SC 164
>SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)
Length = 517
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = +1
Query: 352 LWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 522
+W PD V ++A+ + + + V+ G V W R + M L +P D QTC
Sbjct: 38 VWVPDTVFVDASHAYMHNVMVANHKLDVTPGGRVFWGTRATLIARCHMNLRRYPMDEQTC 97
Query: 523 TFQV 534
+
Sbjct: 98 NLSI 101
>SB_15521| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.1e-15)
Length = 296
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +1
Query: 346 ERLWRPDVVLLNAAATTAGDYALR---ARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQ 516
+ +W P NA D + NG V + RL I+ + L +P+D+Q
Sbjct: 32 DEIWIPSTYFFNAKKAYFHDVTTENYLLMIKPNGDVFYSVRLTITMACKLTLQMFPHDVQ 91
Query: 517 TC 522
C
Sbjct: 92 VC 93
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 251 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 168
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 251 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 168
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_19927| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.9e-07)
Length = 301
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 421 RVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFQV 534
R+ NG++ + RL +++ M L N+P D Q C ++
Sbjct: 64 RIFPNGTLLYSMRLKVTSQCPMDLRNFPMDSQKCRLKM 101
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 328 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 438
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_41593| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 319
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 424 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 525
V+N G V W + S+++ WP D+Q C+
Sbjct: 21 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCS 54
>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
Length = 540
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +2
Query: 110 RKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNELDRQ 289
R+ N H R A + SG P R SQ T HS VR R N G S+ DR+
Sbjct: 425 RQTNPARNHHRSASVSNMSGPPRRGTGASQVGRP-RTSTHSDVRESRDNPGMKSDSRDRE 483
Query: 290 TTELE 304
+ + E
Sbjct: 484 SRDSE 488
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Frame = +1
Query: 319 GCSTWLVSSERLWRPDVVLLNAA--ATTAGD----------YALRARVSNNGSVSWIKRL 462
G S VS +R W PD++L N+ +A + Y + + +NG SW+
Sbjct: 39 GVSQIYVSPKRPWTPDILLYNSVRFVDSAEEDDRLGGGTEKYKTQIEIRSNGYNSWLSPA 98
Query: 463 DISTPISMQLDNWPNDMQTCTFQ 531
+ + +P D Q CT +
Sbjct: 99 MFKSTCDVNTRYFPFDDQHCTLE 121
>SB_32914| Best HMM Match : Neur_chan_memb (HMM E-Value=2.1e-08)
Length = 400
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 424 VSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 525
V+N G V W + S+++ WP D+Q C+
Sbjct: 102 VANTGKVVWQSPATFRSECSIKIRYWPFDVQKCS 135
>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 480
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +1
Query: 352 LWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCT 525
+W PD NA + + NG + + R + M L N+P D+Q C+
Sbjct: 151 IWLPDTYFNNANEYEVYIVNQLSLIKPNGDIYYSGRNKVKGACQMDLFNFPLDVQRCS 208
>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = -1
Query: 701 GKTSGTLPRELPPRHGPGS-APHWTEPSHPT----LLTRTYC 591
G +P L P + G+ AP W E SHPT ++TR C
Sbjct: 576 GAAGSAMPTSLVPINRCGTHAPGWMEGSHPTVAEGIVTRKVC 617
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 236 LTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHE 132
L+++S +G VD FGV +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,531,961
Number of Sequences: 59808
Number of extensions: 566740
Number of successful extensions: 1674
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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