Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J24
         (984 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   4.3  
01_03_0088 + 12327339-12328092,12329474-12329601,12330249-123304...    29   7.5  

>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 225 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 136
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>01_03_0088 +
           12327339-12328092,12329474-12329601,12330249-12330474,
           12332638-12332765,12332880-12333033,12333408-12333841
          Length = 607

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 388 SXXXRRCXQPPXPXTTSGLHPAFRXHQXKCC--SPIP 284
           S   RR  QPP P T +G +PAFR    +     P+P
Sbjct: 51  SNRRRRHDQPPNPTTGNGGNPAFRAPHLRTAYRKPVP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,961,119
Number of Sequences: 37544
Number of extensions: 194209
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)