Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J24
         (984 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 121 SFXTYDRESPPDSK-IVVNLTLHLRHA-HIRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           S+ T +R    +S+ + V   + L+    + E    +   A L++ W+D  L W   E+G
Sbjct: 65  SYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 121 SFXTYDRESPPDSK-IVVNLTLHLRHA-HIRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           S+ T +R    +S+ + V   + L+    + E    +   A L++ W+D  L W   E+G
Sbjct: 65  SYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 202 IRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           + E    +   A L++ W+D  L W   E+G
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 202 IRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           + E    +   A L++ W+D  L W   E+G
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 202 IRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           + E    +   A L++ W+D  L W   E+G
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 202 IRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           + E    +   A L++ W+D  L W   E+G
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 202 IRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           + E    +   A L++ W+D  L W   E+G
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 202 IRESESTVRILADLQMNWIDKXLIWXAGEWG 294
           + E    +   A L++ W+D  L W   E+G
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,025
Number of Sequences: 438
Number of extensions: 2094
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32532591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)