Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J23
(931 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 42 7e-06
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 42 7e-06
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 41 2e-05
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 39 6e-05
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 39 6e-05
AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine recombi... 24 1.9
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 23 3.4
AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory recept... 23 3.4
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 22 5.9
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 41.9 bits (94), Expect = 7e-06
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L + W D L WN E+ G ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 404 GDYALRARVSNNGPVSWI 457
G + V +NG ++
Sbjct: 102 GTFQTNVVVKHNGSCLYV 119
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 41.9 bits (94), Expect = 7e-06
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L + W D L WN E+ G ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101
Query: 404 GDYALRARVSNNGPVSWI 457
G + V +NG ++
Sbjct: 102 GTFQTNVVVKHNGSCLYV 119
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 40.7 bits (91), Expect = 2e-05
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 391
++ E + A L + W D L WN E+ G ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 38.7 bits (86), Expect = 6e-05
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 38.7 bits (86), Expect = 6e-05
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine
recombinase protein.
Length = 340
Score = 23.8 bits (49), Expect = 1.9
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -2
Query: 234 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 88
+++ L C + T +L S GE+R ++ + S + S + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 23.0 bits (47), Expect = 3.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 472 MSKRFYPGDGAVIRYTGAESVVPGGGC 392
MS + DG+VI E VV G GC
Sbjct: 345 MSMLYLGSDGSVILKNYKEMVVVGCGC 371
>AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory receptor
candidate 27 protein.
Length = 346
Score = 23.0 bits (47), Expect = 3.4
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +2
Query: 35 SCHKMSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVV 202
+C ++ T + F TC I +CE + +D ++ R+ KI +
Sbjct: 174 ACISIAYTNVSTDAFFYTCLIQIETQCEIVSDTLRNLDKIVTNGFRNVAESRKIFI 229
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 22.2 bits (45), Expect = 5.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3
Query: 483 ISMQLDNWPND 515
+ M LDNW ND
Sbjct: 295 VEMALDNWKND 305
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,370
Number of Sequences: 336
Number of extensions: 3283
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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