Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J23
(931 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.19
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 26 3.5
12_02_1174 - 26696869-26698191 29 4.0
12_01_0524 - 4167867-4168445 29 4.0
11_06_0016 - 19284810-19284926,19285527-19286879 29 5.3
02_02_0359 - 9390175-9390416,9390924-9391044,9391069-9391410,939... 29 5.3
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 7.0
09_06_0125 - 21011757-21012428 29 7.0
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 29 7.0
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 29 7.0
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 9.2
07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969... 28 9.2
04_01_0530 - 6928528-6929500,6929514-6930964 28 9.2
02_03_0279 + 17250347-17252098 28 9.2
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.19
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 26.2 bits (55), Expect(2) = 3.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 736 PPPSPPPXXPXAPXS 780
PPP PPP P P S
Sbjct: 349 PPPPPPPEPPTGPVS 363
Score = 21.8 bits (44), Expect(2) = 3.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 730 AXPPPSPPP 756
A PPP PPP
Sbjct: 330 APPPPPPPP 338
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +1
Query: 694 PXVGXSXDQXXXAXPPPSPPPXXPXAPXSXXG 789
P V Q PPPSPPP P P G
Sbjct: 203 PPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPG 234
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 4.0
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 160 CEERVDHEGQ*C 125
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 703 GXSXDQXXXAXPPPSPPPXXPXAP 774
G + DQ PPP PPP P P
Sbjct: 76 GAAPDQEPPPSPPPPPPPPPPPRP 99
>02_02_0359 -
9390175-9390416,9390924-9391044,9391069-9391410,
9392400-9392759
Length = 354
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 736 PPPSPPPXXPXAPXSXXGXXXXXFL 810
PPP PPP P AP + G F+
Sbjct: 41 PPPPPPPSQPSAPPAREGRNGYVFV 65
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_06_0125 - 21011757-21012428
Length = 223
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 736 PPPSPPPXXPXAP 774
PPPSPPP P AP
Sbjct: 167 PPPSPPPPPPRAP 179
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +1
Query: 736 PPPSPPPXXPXAP 774
PPPSPPP P AP
Sbjct: 33 PPPSPPPRHPLAP 45
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 28.7 bits (61), Expect = 7.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 700 VGXSXDQXXXAXPPPSPPPXXPXAP 774
+G ++ PPP PPP P AP
Sbjct: 538 IGPLGEEGLVGPPPPPPPPPPPPAP 562
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>07_03_1012 +
23295976-23296264,23296475-23296548,23296972-23296996,
23297486-23297568,23297653-23297685,23298322-23298469,
23298625-23298722
Length = 249
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 773 GAXGXXGGGDGGGXAXXXWSXXSP 702
G G GGG GGG WS P
Sbjct: 25 GGGGGGGGGSGGGGGGGRWSGVRP 48
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 76 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_03_0279 + 17250347-17252098
Length = 583
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 700 VGXSXDQXXXAXPPPSPPPXXPXAP 774
+ S Q A PPP PPP P P
Sbjct: 112 IDDSPQQAAAASPPPPPPPPPPPPP 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,675,767
Number of Sequences: 37544
Number of extensions: 497923
Number of successful extensions: 5023
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4434
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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