Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J23
(931 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 48 1e-05
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 44 2e-04
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 43 3e-04
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 43 4e-04
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 42 0.001
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 41 0.002
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 39 0.007
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 38 0.012
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 37 0.020
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 36 0.035
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.047
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.047
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.11
SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07) 33 0.25
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 33 0.33
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 33 0.43
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 1.0
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 31 1.8
SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 1.8
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.8
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.3
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 29 4.1
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 4.1
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 5.4
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 29 5.4
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 25 5.9
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24) 29 7.1
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 48.0 bits (109), Expect = 1e-05
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 304
++ LL Y +D+ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 305 WNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNN 439
WN ++G + ++ +R+W+PDV+L N A+T +L ++ N
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTN 140
Score = 44.0 bits (99), Expect = 2e-04
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLS 304
+++ L Y +D+ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 305 WNAGEW-GCSTWLVSSERLWRPDVVLLN 385
WN ++ G + +++ +++W+PDV+L N
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 44.0 bits (99), Expect = 2e-04
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = +2
Query: 152 LLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDKRLSWNAG 316
L TY++D P D + V L L L ++ + T+ + ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 317 EW-GCSTWLVSSERLWRPDVVLLNAA 391
+ G ++ + RLW PD+ L N A
Sbjct: 80 AYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 44.0 bits (99), Expect = 2e-04
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Frame = +2
Query: 251 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLNAAATTAGDYALR- 421
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN A ++ +
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNE 91
Query: 422 ---ARVSNNGPVSWI 457
V +NG V W+
Sbjct: 92 GNPVLVESNGVVRWL 106
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 278 MNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 391
+ W++ LSWNA E+G +T V +RLW PD+VL N A
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNA 115
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 42.7 bits (96), Expect = 4e-04
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +2
Query: 206 LTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 382
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 383 NAAATTAG--DYALRARVSNNGPVSWIKAL 466
N+A + +R +++ G V W+ L
Sbjct: 81 NSANKDMDLREKNIRLFINSAGEVLWMNPL 110
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 41.5 bits (93), Expect = 0.001
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +2
Query: 239 ESESTVRIQADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGD-- 409
E +++ ++ W + LSWNA E+G S + ++LW+PD+ L N A ++A
Sbjct: 104 EKYELLKLSLYVRQIWKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSL 163
Query: 410 YALRA--RVSNNGPVSWI 457
Y +A +VS+ G W+
Sbjct: 164 YGFKAKIKVSHTGLNMWL 181
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 40.7 bits (91), Expect = 0.002
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +2
Query: 251 TVRIQADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLN 385
T+R+Q ++ W D +L W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 38.7 bits (86), Expect = 0.007
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNA 388
+ + W + LSWNA E+ G S VS +R W PD++L N+
Sbjct: 21 IAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 38.3 bits (85), Expect = 0.009
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 224 HANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NAAAT 397
H + + TV L W D L+WN ++ G + V +W PD+VL N +
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYNNVDSD 258
Query: 398 TAGD---YALRARVSNNGPVSWIKAL 466
++G+ + + + ++G V W+ +
Sbjct: 259 SSGEMYKFTTKVNIHSDGTVQWLSPI 284
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 37.9 bits (84), Expect = 0.012
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +2
Query: 215 HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-NA 388
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L NA
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 389 AATTAG---DYALRARVSNNGPVSW 454
T AG Y S++G W
Sbjct: 166 DETYAGGLEKYKTSVIASSDGTQEW 190
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 37.1 bits (82), Expect = 0.020
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIR---ESESTVRIQADLQM 280
++ L L+ D Y+++ P D + V + + + + E + + ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 281 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 385
NW + L WNA E+G L +S +W PD+VL N
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 36.3 bits (80), Expect = 0.035
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 391
+ + W D RL WN ++G +++ S +LW PD+ L N A
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYNNA 316
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 35.9 bits (79), Expect = 0.047
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Frame = +2
Query: 233 IRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAA----T 397
+ E L+M W D L WN ++G T + + + +W P V++ N A +
Sbjct: 534 VEEKNMVFTTNVRLRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQAGDLGES 593
Query: 398 TAGDYALRARVSNNGPVSWI 457
R V ++G V W+
Sbjct: 594 ITSSNTPRPVVRSDGTVLWM 613
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 35.9 bits (79), Expect = 0.047
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARV------ 430
+++ W D L+WN ++G + V +W+PD++L N A+T +L ++
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVIL 85
Query: 431 SNNGPVSWI 457
S++G +W+
Sbjct: 86 SSDGSAAWL 94
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 34.7 bits (76), Expect = 0.11
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Frame = +2
Query: 47 MSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRH 226
M+ + LLPFL S E+ +++ L Y++++ P V+N + +
Sbjct: 1 MAPLLLSLLPFLFVFPSLSVDHTEDVEHR--LLNDLFKDYNKEARP----VLNKSEAI-- 52
Query: 227 ANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN--AAAT 397
E + + + + W++ L+W+ +G T + V+ +W+PD+VL +
Sbjct: 53 ----EVQFDMAYAQLINLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGE 108
Query: 398 TAGDYAL--RARVSNNGPVSW 454
T Y RA + +NG W
Sbjct: 109 TGAIYKFDTRATIMHNGYTEW 129
>SB_27375| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.3e-07)
Length = 240
Score = 33.5 bits (73), Expect = 0.25
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3
Query: 486 SMQLDNWPNDMQTCTFKFGS 545
SM L WP D QTC KFGS
Sbjct: 200 SMALSRWPFDQQTCAMKFGS 219
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 33.1 bits (72), Expect = 0.33
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 191 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRP 367
K +V LH + A + S S VR+ +++ W + L WN ++ G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 368 DVVLLN 385
D+VL N
Sbjct: 127 DIVLYN 132
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 32.7 bits (71), Expect = 0.43
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +2
Query: 284 WIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAG---DYALRARVSNNGPV 448
W + L WN +G + VS ++W PD+VL NA A+T G ++ R VS++G
Sbjct: 40 WYNPFLRWNETFYGGIKEINVSPLQVWTPDLVLYNNADASTDGSLENFKTRIIVSSDGKN 99
Query: 449 SWI 457
W+
Sbjct: 100 MWL 102
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 32.3 bits (70), Expect = 0.57
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 254 VRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
V + + + W + L+W+ +G T + V R+WRPD++L N A
Sbjct: 69 VSLHQIIDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNA 115
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT----TAGDYALRARVSN 436
+ + W + ++WN E+G + + LW+PD+ L N A + + + + +V+
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNADSGYDGSLYGFTAKIKVNY 103
Query: 437 NGPVSWI 457
+G +W+
Sbjct: 104 SGTNTWL 110
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 30.7 bits (66), Expect = 1.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 284 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGPVS 451
W ++ L+W+ E+G ST V+ +++W PD+ L N R S+N P S
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYLYNNPGDPLVLERPPPRWSSNSPYS 58
>SB_44970| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 506
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +2
Query: 272 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATTAG----DYALRARVSN 436
+ + W ++ L+W+ + G T + ++ +W PD+VL ++A + Y +S
Sbjct: 45 VNVRWDNELLTWHPSNYEGVQTVRLDAKSVWIPDIVLYDSADSVFSGGHEKYKTHVIISK 104
Query: 437 NGPVSW 454
+G +W
Sbjct: 105 DGSSAW 110
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 284 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVL 379
W + L+WN E+G T VS +W PD+VL
Sbjct: 53 WYNPLLTWNVTEYGGLKTINVSPTIIWLPDIVL 85
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 275 QMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 385
+ W D L W+ + G T + V LW+PD+VL N
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYN 125
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.5 bits (63), Expect = 4.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 284 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 385
W D L W+ ++ S + +W PDV L+N
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLIN 437
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 221 RHANIRESEST-VRIQADLQMNWIDKRLSWNAG-EWGCSTWLVSSERLWRPDVVLLN 385
R+++ ++S++ + + W D L WN G V +W PD+ L+N
Sbjct: 10 RYSSCQDSKAQELTTNLRIYQEWKDPNLKWNKSIAQGVEEIFVDPSDIWTPDIALMN 66
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 256 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 173
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -1
Query: 256 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 173
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 332 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 442
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 563
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -1
Query: 472 MSKRFYPG-DGAVIRYTGAESVVPGG 398
M++ F+ G DG V+ Y G ESV+ GG
Sbjct: 139 MNRAFWKGPDGPVLLYVGGESVLSGG 164
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 24.6 bits (51), Expect(2) = 5.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 736 PPPSPPPXXP 765
PPPSPPP P
Sbjct: 211 PPPSPPPPPP 220
Score = 22.6 bits (46), Expect(2) = 5.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 739 PPSPPPXXPXAP 774
PP PPP P +P
Sbjct: 226 PPRPPPPPPPSP 237
>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
Length = 540
Score = 28.7 bits (61), Expect = 7.1
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = +1
Query: 115 RKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNELDRQ 294
R+ N H R A + SG P R SQ T HS VR R N G S+ DR+
Sbjct: 425 RQTNPARNHHRSASVSNMSGPPRRGTGASQVGRP-RTSTHSDVRESRDNPGMKSDSRDRE 483
Query: 295 TTELE 309
+ + E
Sbjct: 484 SRDSE 488
>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 28.3 bits (60), Expect = 9.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 703 GXSXDQXXXAXPPPSPPPXXPXAP 774
G + D+ PPP PPP P P
Sbjct: 766 GAAIDKKALGAPPPPPPPTKPATP 789
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 257 RIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLN 385
+++ + + W + L+W+ ++G + V+ E +W PD+V+ N
Sbjct: 1463 KLKQIVDLQWENPILTWDPRDYGGVQEINVAPEEVWVPDIVIYN 1506
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 9.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -1
Query: 241 LTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHE 137
L+++S +G VD FGV +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,460,805
Number of Sequences: 59808
Number of extensions: 451271
Number of successful extensions: 2229
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2042
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -