Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J20
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica...    31   0.73 
At3g49290.1 68416.m05387 expressed protein                             30   1.7  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    29   3.9  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   6.8  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   6.8  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    28   6.8  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    28   6.8  
At4g22660.1 68417.m03270 F-box family protein contains Pfam PF00...    28   9.0  
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    28   9.0  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   9.0  

>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 862

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = -2

Query: 222 LKCRVRLTTILESGGGSRSYVARSESIM-RDSDVAFSHSAALAIAQVRRNGNKNNISRRH 46
           + C++ +   LE+    +S ++R   ++  +SD +F  S A+ + +   NG+K ++ +  
Sbjct: 126 IPCQIHVFAKLEASSTVKSTISRGGLVLISESDTSFGLSEAVVVKEQMGNGDKRSVDKIF 185

Query: 45  FMTTDLLKL 19
            +  + +KL
Sbjct: 186 KLVDENVKL 194


>At3g49290.1 68416.m05387 expressed protein
          Length = 312

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -3

Query: 383 LAVPRQASTSVPRTPAKCRSPTPLRSNSVVCRSNS 279
           +A  + AS S P TP+K RS TP+R  S   RS S
Sbjct: 231 VATRKSASISRPTTPSKSRSITPIRYPSEPRRSAS 265


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -3

Query: 455 SRRRSRY*IHGRGE-----RSPRRWLQPRLAVPRQASTSVPRTPAKCRSPTPLRSNS 300
           SR RSR    GRG      RS  R   PR  + +    S+ R+ +K RSP+P +  S
Sbjct: 213 SRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKS 269


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 336
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 336
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 452 RRRSRY*IHGRGERSP--RRWLQPRLAVPRQASTSVPRTPAKCRSPTPLRSNS 300
           RRR      GR   SP  RR+  P    PR +   +  +P + RSP PLR  S
Sbjct: 260 RRRPASPSRGRSPSSPPPRRYRSP----PRGSPRRIRGSPVRRRSPLPLRRRS 308


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 452 RRRSRY*IHGRGERSP--RRWLQPRLAVPRQASTSVPRTPAKCRSPTPLRSNS 300
           RRR      GR   SP  RR+  P    PR +   +  +P + RSP PLR  S
Sbjct: 267 RRRPASPSRGRSPSSPPPRRYRSP----PRGSPRRIRGSPVRRRSPLPLRRRS 315


>At4g22660.1 68417.m03270 F-box family protein contains Pfam
           PF00646: F-box domain; similar to  F-box protein family,
           AtFBX7 (GI:20197899) [Arabidopsis thaliana]
          Length = 396

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +2

Query: 224 HANIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWLV----SSERLWR--PDVVL 379
           H  + +  +TVR      + WID++       WG G W V    + ++LW   P+++L
Sbjct: 157 HVKLFKGNNTVRTP----VFWIDEKTKEYIALWGLGYWCVVYAKNGDKLWNQIPEIIL 210


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 247 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 134
           LGL N S S   G    D G+GGG P +  +     EG
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 PRNVRSGPPPRLQNRSQPDPA 216
           PR+  +  PPRL NR+ P PA
Sbjct: 75  PRSPSTSTPPRLGNRNPPPPA 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,320,410
Number of Sequences: 28952
Number of extensions: 308223
Number of successful extensions: 998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)