Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J15
         (880 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    61   1e-11
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    59   4e-11
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    58   7e-11
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    57   2e-10
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    57   2e-10
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    37   2e-04
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.34 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   7.3  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.7  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
 Frame = +2

Query: 125 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTW 304
           +R + +     ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    
Sbjct: 19  ERPVANESEPLEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKD 77

Query: 305 L-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 478
           L ++  +LW+PDV++ N+A     G +     V +NGS  ++      +   M +  +P 
Sbjct: 78  LRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPF 137

Query: 479 DMQTCTFKFGSRMHXSDXMDFVID 550
           D Q C  KFGS  +  + +D V++
Sbjct: 138 DDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 59.3 bits (137), Expect = 4e-11
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
 Frame = +2

Query: 125 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTW 304
           +R + +     ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    
Sbjct: 19  ERPVANESEPLEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKD 77

Query: 305 L-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 478
           L ++  +LW+PDV++ N+A     G +     V +NGS  ++      +   + +  +P 
Sbjct: 78  LRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPF 137

Query: 479 DMQTCTFKFGSRMHXSDXMDFVID 550
           D Q C  KFGS  +  + +D V++
Sbjct: 138 DDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 58.4 bits (135), Expect = 7e-11
 Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
 Frame = +2

Query: 125 QRTIGSLPPXSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTW 304
           +R + +     ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    
Sbjct: 19  ERPVANESEPLEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKD 77

Query: 305 L-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 478
           L ++  +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P 
Sbjct: 78  LRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPF 137

Query: 479 DMQTCTFKFGSRMHXSDXMDFVID 550
           D Q C  KFGS  +  + +D V++
Sbjct: 138 DDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
 Frame = +2

Query: 239 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 412
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 413 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHXSDXMDFVID 550
             ++      +   M +  +P D Q C  KFGS  +  + +D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
 Frame = +2

Query: 239 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 412
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 413 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHXSDXMDFVID 550
             ++      +   M +  +P D Q C  KFGS  +  + +D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
 Frame = +2

Query: 251 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSN 403
           W D RL++     G  T  V SE    +W PD   +N        ATT+ ++    RV +
Sbjct: 96  WTDPRLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHH 151

Query: 404 NGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 511
           +GS++   RL I+    M L   P D Q C  +  S
Sbjct: 152 SGSITRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 380 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 481
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 427 LYPG-DGAVIRYTGAESVVPGGGC 359
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/39 (25%), Positives = 16/39 (41%)
 Frame = +1

Query: 22  LILFWLPFLLTCAIASAAECENATSLSLMIDSLLATYDR 138
           L+ FW  F +   +    +C N    S +   +  T DR
Sbjct: 271 LLTFWSAFFIVNVLYICNQCYNTVEESRIFGLVTFTPDR 309


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,689
Number of Sequences: 336
Number of extensions: 3260
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24306755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)