Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J14
         (853 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24310 Cluster: Polyprotein; n=1; Drosophila melanogast...    42   0.026
UniRef50_Q41DP0 Cluster: Putative uncharacterized protein precur...    34   5.2  
UniRef50_UPI00006CFC11 Cluster: hypothetical protein TTHERM_0053...    33   6.9  
UniRef50_Q4YVL7 Cluster: Putative uncharacterized protein; n=5; ...    33   6.9  
UniRef50_Q4UDC7 Cluster: Putative uncharacterized protein; n=2; ...    33   9.1  

>UniRef50_Q24310 Cluster: Polyprotein; n=1; Drosophila
           melanogaster|Rep: Polyprotein - Drosophila melanogaster
           (Fruit fly)
          Length = 1053

 Score = 41.5 bits (93), Expect = 0.026
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 300 NTSSGTPQERECSIRKSCNNVS--VTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNG 473
           N  +  P   EC    +   V+   T   ++  EEI  + VLAH+A  D R   + FT+ 
Sbjct: 111 NLLNSRPTAAECYAVYASRLVTQLTTKWRNMEIEEIAVTTVLAHMANIDSRLQRVLFTSN 170

Query: 474 NTTRNKLLQEIKA 512
             TR+KL  E+KA
Sbjct: 171 VRTRSKLQAELKA 183


>UniRef50_Q41DP0 Cluster: Putative uncharacterized protein
           precursor; n=1; Exiguobacterium sibiricum 255-15|Rep:
           Putative uncharacterized protein precursor -
           Exiguobacterium sibiricum 255-15
          Length = 359

 Score = 33.9 bits (74), Expect = 5.2
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
 Frame = +3

Query: 357 NVSVTSMEDLS----HEEIVTSYVLAHVAQFDCRRHHMAFTNGNTTRNKLLQEIKASAN 521
           N+SV+S +++S    H E++  YV+ ++   D  +  +  +NG TT  K L+ +K+ +N
Sbjct: 196 NLSVSSQDEISLLGIHNEVIVYYVMENINGTDVSKEKLYMSNGKTT--KRLKGLKSFSN 252


>UniRef50_UPI00006CFC11 Cluster: hypothetical protein
           TTHERM_00530160; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00530160 - Tetrahymena
           thermophila SB210
          Length = 598

 Score = 33.5 bits (73), Expect = 6.9
 Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
 Frame = +1

Query: 67  SDGCTYWLKLDKC*SELLR*HIVD*IRNQKVTSFYLVFNKIMSTL*LTSEVRSGLYSHWR 246
           S+G  YW        ++L   +   I  ++V S Y +F+ I   +    E    ++  ++
Sbjct: 6   SEGGDYWQTAAYVFIQILCFQVYLTIIYKQVISIYYIFHYIHFKITDDYETLKNIHEDFK 65

Query: 247 DVFEHVRSTAKKSIMQIRILVVVRHKNVNAAYVSRVITSLLPRWKI*VTKKSSHLTFWL- 423
             ++ ++    + +   RI VV+  KN    +  +V+ +L    K  + +K   + +   
Sbjct: 66  QHYQKLKDEKSEQVQ--RIQVVINEKNDIENHYEQVVKNL----KNQIEEKQREIEYIQA 119

Query: 424 -MLPSLTVDVITWRLLTEIQ 480
            +LPSL  D+I  RLL E++
Sbjct: 120 KVLPSLDQDMIRVRLLNELE 139


>UniRef50_Q4YVL7 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 327

 Score = 33.5 bits (73), Expect = 6.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 339 IRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNTTRNKLLQ 500
           I ++ N  S+  ++     E + +YV  H   FDC   ++     N T+NK++Q
Sbjct: 171 IIENINKYSIDQIDKFEEIEHIITYVYFHNIHFDCMTENLVTFLENHTKNKIIQ 224


>UniRef50_Q4UDC7 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 891

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +3

Query: 354 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNTTRNKLLQEIKASANLK*N 533
           N V+ T   ++++ +    + LAH + F    H+M + + N+  N + Q    S N    
Sbjct: 288 NTVANTPNSNVTNSKYTLDHQLAHNSSFVPNSHNMGYKSVNSVNNNISQS-NISQNTNIT 346

Query: 534 FDRNNGSVMTSG 569
            +  NGS   SG
Sbjct: 347 CNNVNGSTFVSG 358


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,547,864
Number of Sequences: 1657284
Number of extensions: 15303626
Number of successful extensions: 32453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32440
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75013275813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)